GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000659-TA|BGIBMGA000659-PA|IPR013120|Male sterility
C-terminal, IPR004262|Male sterility
         (432 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    23   5.0  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   6.6  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 5.0
 Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 5/87 (5%)

Query: 17  LVTGGTGFMGKVLVEKLLYSVPEIGNVYILMRPKKAKTVAQRLEDL--QRLPLFDRLKNE 74
           LVTG    +GK L+E L+    ++  + I  +  K KT+ + L+    + +PL   L N+
Sbjct: 11  LVTGANSGIGKCLIECLVGKGMKV--IGIAPQVDKMKTLVEELKSKPGKLVPLQCDLSNQ 68

Query: 75  RPNALNKIKAIQGDVLFEDFGLSNLEI 101
             + L  I+ ++ ++   D  ++N  I
Sbjct: 69  N-DILKVIEWVEKNLGAIDILINNATI 94


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 120 LEAPLKD-NVNMNTSGTLRTIKVAKKLKNLQIFVHLSTAFCYPD 162
           ++   KD N+ ++T     T++ A  LKN +IF   S  F Y +
Sbjct: 461 IDKETKDMNLEISTRPKSNTVENACVLKNTEIFKDKSDWFDYSE 504


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.323    0.140    0.432 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,947
Number of Sequences: 429
Number of extensions: 5740
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7
Number of HSP's gapped (non-prelim): 2
length of query: 432
length of database: 140,377
effective HSP length: 60
effective length of query: 372
effective length of database: 114,637
effective search space: 42644964
effective search space used: 42644964
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 45 (22.2 bits)