Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
         (179 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   1.7  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    23   2.3  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   3.0  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   4.0  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    21   6.9  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   9.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.1  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
          receptor protein.
          Length = 1040

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 11/44 (25%), Positives = 20/44 (45%)

Query: 52 DSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLN 95
          D    +   + +  QPS    LR    + H+PI H  R+ + ++
Sbjct: 52 DGRGTIFEGHDDREQPSVYPLLRFENPETHHPIRHGRRQSRSMD 95


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 20  NPDRVLNSVLGRLERNRQALAKEARLD 46
           NP  +  +V GR+E   Q L    RL+
Sbjct: 471 NPSHMYRAVCGRIENTIQGLPPPYRLN 497


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)

Query: 23  RVLNSVLGRLERNRQALAKEARLDNSD 49
           RVL  V   +ERN + LA++ R +  +
Sbjct: 392 RVLGRVHATIERNEKRLAEQDRRERME 418


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 137 NKTIHLTRRRYSSDCWETRTLVIPAGCECMWPVYR 171
           N  I +  RR   +C   + L +    ECM P Y+
Sbjct: 25  NCEIDMYMRRKCQECRLKKCLTVGMRPECMVPEYQ 59


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 33  ERNRQALAKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHY 82
           +RNR+   K+ R +    +  + +      E    SRE+E +    ++ Y
Sbjct: 240 DRNREYRKKDRRYEKLHNEKEKLLEERTSRERYSRSREREQKSYKNEREY 289


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
          Am-EAAT protein.
          Length = 543

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 66 QPSREKELRHVTTQKHYPICH 86
          Q S   E+  +TT +   ICH
Sbjct: 24 QTSTSDEIEKITTVEEEKICH 44


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 107  EEVRCTMATSEDLGVT 122
            E+VRC   TS+ L V+
Sbjct: 1116 EDVRCAALTSQSLQVS 1131


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 107  EEVRCTMATSEDLGVT 122
            E+VRC   TS+ L V+
Sbjct: 1112 EDVRCAALTSQSLQVS 1127


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,679
Number of Sequences: 429
Number of extensions: 2881
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 179
length of database: 140,377
effective HSP length: 54
effective length of query: 125
effective length of database: 117,211
effective search space: 14651375
effective search space used: 14651375
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)