Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
         (179 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69630.1 68414.m08010 F-box family protein contains F-box dom...    28   3.1  
At1g02080.1 68414.m00130 transcriptional regulator-related conta...    28   3.1  
At4g27610.2 68417.m03968 expressed protein                             28   4.1  
At4g27610.1 68417.m03967 expressed protein                             28   4.1  
At2g28600.1 68415.m03476 expressed protein                             28   4.1  
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati...    28   4.1  
At1g66310.1 68414.m07530 F-box family protein contains F-box dom...    27   7.2  
At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal ...    27   9.5  
At3g05380.1 68416.m00588 myb family transcription factor contain...    27   9.5  
At1g20600.1 68414.m02573 DNA-binding protein-related low similar...    27   9.5  

>At1g69630.1 68414.m08010 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 451

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 17/43 (39%), Positives = 21/43 (48%)

Query: 13 EHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSET 55
          E +L +P  D V  SVL R  RN         LDN+D Q+  T
Sbjct: 30 EVLLNLPTKDVVKTSVLSRRWRNLWKHVPGLDLDNTDFQEFNT 72


>At1g02080.1 68414.m00130 transcriptional regulator-related contains
            Pfam PF04054: CCR4-Not complex component, Not1; contains
            TIGRFAM TIGR01612: reticulocyte binding protein; similar
            to General negative regulator of transcription subunit 1
            (SP:P25655) {Saccharomyces cerevisiae}; Location of ESTs
            gb|T44328 and gb|AA395265
          Length = 2378

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 19/84 (22%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 48   SDCQDSETVVLPEYTESIQPSREKELRHVTTQKHYP--ICHLERKIKKLNPDEYEYRPAY 105
            SD QD  + ++   + +   S+ KE   +  Q++YP    ++  K   + P+ ++    +
Sbjct: 947  SDVQDKVSFIINNISTTNIESKGKEFAEILPQQYYPWFAQYMVMKRASIEPNFHDLYLKF 1006

Query: 106  YEEVRCTMATSEDLGVTNEICSSL 129
             ++V   +   E L  T E C  L
Sbjct: 1007 LDKVDSKLLFKEILQNTYENCKVL 1030


>At4g27610.2 68417.m03968 expressed protein 
          Length = 334

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 7   SARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQ 66
           SA D    ++ +P P    N V+     +R  L       NS+C DS  V   E +  I 
Sbjct: 113 SASDTSLPLVTVPAPSSKENGVMWATSPDRLELPPRPYNHNSNCSDSPCV--SETSSDIF 170

Query: 67  PSRE--KELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMAT 115
             RE  ++LR    ++   I  ++ +I +L  + Y  + A+   ++  + T
Sbjct: 171 SKREVIQKLRQQLKRRDDMIQEMQEQILELQ-NSYNAQTAHSSHLQAQLDT 220


>At4g27610.1 68417.m03967 expressed protein 
          Length = 334

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 27/111 (24%), Positives = 48/111 (43%), Gaps = 5/111 (4%)

Query: 7   SARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQ 66
           SA D    ++ +P P    N V+     +R  L       NS+C DS  V   E +  I 
Sbjct: 113 SASDTSLPLVTVPAPSSKENGVMWATSPDRLELPPRPYNHNSNCSDSPCV--SETSSDIF 170

Query: 67  PSRE--KELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMAT 115
             RE  ++LR    ++   I  ++ +I +L  + Y  + A+   ++  + T
Sbjct: 171 SKREVIQKLRQQLKRRDDMIQEMQEQILELQ-NSYNAQTAHSSHLQAQLDT 220


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 3/44 (6%)

Query: 26  NSVLGRLERNRQALAKEA---RLDNSDCQDSETVVLPEYTESIQ 66
           +S L  ++++R+ +A      +LD +  +DSETV+LP++  SI+
Sbjct: 400 DSKLSEVKKSRKPVAHLIDFEQLDTTVMRDSETVLLPDFFPSIE 443


>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
           identified as SEC22 by Raikhel, NV, et al. in Plant
           Physiol. 124: 1558-69 (2000); similar to vesicle
           trafficking protein gb|U91538 from Mus musculus; ESTs
           gb|F15494 and gb|F14097 come from this gene
          Length = 218

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/52 (30%), Positives = 23/52 (44%)

Query: 78  TQKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMATSEDLGVTNEICSSL 129
           T+K Y     +R I KLN + YE        V+  +   E L   +E+ S L
Sbjct: 123 TKKLYQDTRTQRNIAKLNDELYEVHQIMTRNVQEVLGVGEKLDQVSEMSSRL 174


>At1g66310.1 68414.m07530 F-box family protein contains F-box
          domain Pfam:PF00646
          Length = 442

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 15 VLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVV 57
          +L +P  D V  SVL    RN   L     LD+SD  ++ T V
Sbjct: 33 LLNLPTKDVVKTSVLSSKWRNLWRLVPGLDLDSSDFTENNTFV 75


>At5g60440.1 68418.m07581 MADS-box protein (AGL62) contains Pfal
           profile PF00319: SRF-type transcription factor
           (DNA-binding and dimerisation domain)
          Length = 299

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 13/53 (24%), Positives = 21/53 (39%)

Query: 58  LPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEVR 110
           +PEY  + +P        +  Q    I    +  K+ N  EYE+   Y  + R
Sbjct: 243 VPEYNVNFRPEYNPNQNQIQNQNQVQIQIQNQSFKRENISEYEHHHGYPPQSR 295


>At3g05380.1 68416.m00588 myb family transcription factor contains
           Pfam profile:PF00249 Myb-like DNA-binding domain
          Length = 1055

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 21  PDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVL-PEYTESIQPSREKEL 73
           PD  L   +  +E   +  +K +RL ++DC D  T  L P+ + S++  + K L
Sbjct: 439 PDDSLLHAISSVENANKRKSKPSRLVSTDCDDVPTGKLQPQTSGSLRKRKPKVL 492


>At1g20600.1 68414.m02573 DNA-binding protein-related low
          similarity to RAV2 [Arabidopsis thaliana] GI:3868859
          Length = 237

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 2/78 (2%)

Query: 22 DRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKH 81
          D  +  +L +L ++   + +E  +D+ D  D E   LP    S    ++   R   T+K+
Sbjct: 15 DEEVTYILAQLMQD--VMDREEDIDDEDDIDDEVASLPLLLVSQANQKQSRKREEKTEKN 72

Query: 82 YPICHLERKIKKLNPDEY 99
           P     + I K+N  ++
Sbjct: 73 QPKRVKNQNIMKINIHDF 90


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,434,137
Number of Sequences: 28952
Number of extensions: 183123
Number of successful extensions: 468
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 463
Number of HSP's gapped (non-prelim): 10
length of query: 179
length of database: 12,070,560
effective HSP length: 77
effective length of query: 102
effective length of database: 9,841,256
effective search space: 1003808112
effective search space used: 1003808112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)