GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
         (179 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    33   0.024
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   4.9  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   6.4  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   6.4  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   6.4  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.5  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   8.5  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 71  KELRHVTTQKHY--PICHLERKIKKLNPDEYE---YRPAYYEEVRCTMATSEDL-GVTNE 124
           +E  H  T K Y      LER+ +++ P  ++   Y   Y ++      T +   G  N 
Sbjct: 2   EETAHELTVKQYVEQQRELEREAREVLPYSFDTCTYSMGYLKQPLYACLTCQKASGSLNA 61

Query: 125 ICSSLGFSCVQWNKTIHL-TRRRYSSDCWETRTLVIP 160
           +C S   SC   +  + L  +R +  DC  TRT  IP
Sbjct: 62  VCYSCSISCHADHDLVDLFNKRHFRCDCGTTRTHSIP 98


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 100  EYRPAYYEEVRCTMATSEDLGVTNEI-CSSLGFSCVQWNKTIHLTRR 145
            + + A+  E+R        + +T E+ C  LGFS   W     L +R
Sbjct: 3212 DIKKAHLIELRSLSRPPMAIRITMEVVCKLLGFSATDWKNVQQLLKR 3258


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 89  RKIKKLNPDEYEYRPAYYEEVRCTMATSEDL 119
           R+   L+P E E RP   +E+   +A SED+
Sbjct: 459 REAAPLSPTEEESRPITRDELMKKLARSEDI 489


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 53  SETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEE 108
           +  ++   YT++ +  +E E +           H E K +   PDE E RP   EE
Sbjct: 444 THNILAKHYTQATKAKQEIEDQQRQASAAREESHTEWKPRFFVPDEKEGRPTLTEE 499


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 14/65 (21%), Positives = 31/65 (47%)

Query: 42  EARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEY 101
           +ARL    C+  E ++  E+  S     + +L+     +   +  LE+ +K++   ++E 
Sbjct: 178 KARLWIKMCEYQERLLFDEFRRSNSDDIKGKLKIENNSRSVKLSILEKALKEVKGCDHEI 237

Query: 102 RPAYY 106
             +YY
Sbjct: 238 LVSYY 242


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 39  LAKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQ 79
           L KE   + S    SE  + P+Y     PS+  +  H  T+
Sbjct: 62  LQKEENSNTSKASSSEDEIAPKYLYPSSPSKSTKKPHNETE 102


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 22  DRVLNSVLGRLE-RNRQALAKEARLDNSD----CQDSETVVLPEYTESIQPSR 69
           +R +N V G  E   + A  K     N D    CQ S T  +PE T S    R
Sbjct: 328 ERSMNYVFGESELEEKNASTKTENDSNEDDKEECQSSSTSSVPESTASTPKKR 380


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 863,669
Number of Sequences: 5004
Number of extensions: 35786
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 7
length of query: 179
length of database: 2,362,478
effective HSP length: 69
effective length of query: 110
effective length of database: 2,017,202
effective search space: 221892220
effective search space used: 221892220
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)