Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
(179 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0192 - 2245794-2246186,2246699-2247490 31 0.70
02_01_0477 + 3431509-3431551,3432243-3432319,3432417-3432542,343... 30 0.92
01_06_0836 - 32321431-32321556,32321656-32321872,32321975-323235... 29 1.6
11_06_0564 - 25022353-25022546,25022654-25022894,25022936-250230... 29 2.1
04_04_0586 - 26405083-26405544 28 3.7
10_08_0736 + 20205934-20206551,20207258-20207426,20207562-202076... 27 6.5
04_03_0615 + 18048787-18048865,18048897-18049753 27 6.5
11_06_0143 + 20589574-20589684,20590256-20590873,20590943-205910... 27 8.6
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 8.6
01_06_0852 + 32463784-32463834,32463957-32464628,32465515-324656... 27 8.6
>04_01_0192 - 2245794-2246186,2246699-2247490
Length = 394
Score = 30.7 bits (66), Expect = 0.70
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 46 DNSDCQDSETVVLPEYTESIQPSREKELR 74
DN DCQ + TVV+PE+ + IQ S E +++
Sbjct: 78 DNEDCQ-AITVVIPEWIQDIQNSYEGDIQ 105
>02_01_0477 +
3431509-3431551,3432243-3432319,3432417-3432542,
3432638-3432715,3432797-3432952,3433044-3433140,
3433595-3433817,3440445-3440760,3440895-3441390,
3441485-3441651
Length = 592
Score = 30.3 bits (65), Expect = 0.92
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 3 SSEESARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYT 62
+S S +D I+ + I N +V+N +E N A E S+ QD E + +
Sbjct: 141 ASRWSKKD-IDELYNINNTHQVVNGSTPEVENNVSASELENNGTTSNNQDDEDIAITHTY 199
Query: 63 ESIQPSREKELRHVTTQKHYPICHLERKIKKLNPD 97
+I R E+ T + C+L K + N D
Sbjct: 200 RTISKKRNNEITRYTYK-----CNLHGKNEDNNKD 229
>01_06_0836 -
32321431-32321556,32321656-32321872,32321975-32323590,
32323670-32323753,32323834-32324104,32324294-32324547,
32324709-32324918,32325839-32326024
Length = 987
Score = 29.5 bits (63), Expect = 1.6
Identities = 35/150 (23%), Positives = 61/150 (40%), Gaps = 11/150 (7%)
Query: 2 SSSEESARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETV----- 56
S+SE +R+ E + ++ S L ++++ RQ L ++ + + +S
Sbjct: 570 SNSETLSREHKEFMSKMQQEHA---SWLSKIQQERQDLKRDIDIQRVELLNSAKARQMEI 626
Query: 57 --VLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMA 114
L E E + + KEL H+ +QK LE +L + E + A E R
Sbjct: 627 DSYLREREEEFEQKKAKELEHINSQKEMINTKLEHVAVELQKLKDERKEATLERERREQE 686
Query: 115 TSEDLGVTNEICSSLGFSCVQWNKTIHLTR 144
SE G T E ++ + K +H R
Sbjct: 687 LSEIKG-TIEALNNQREKLQEQRKLLHSDR 715
>11_06_0564 -
25022353-25022546,25022654-25022894,25022936-25023041,
25023341-25023565,25023704-25023793,25025001-25025120,
25025210-25025356,25026282-25026490
Length = 443
Score = 29.1 bits (62), Expect = 2.1
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 25 LNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQPSREKELR-HVTTQKH 81
LN L+ +A + + +D SD DS T LP+ E++ P E++ + H+ +H
Sbjct: 147 LNDSPSALDSADRATVRASSMD-SDLPDSATAKLPDVEEALSPRSERKRKIHLYLAEH 203
>04_04_0586 - 26405083-26405544
Length = 153
Score = 28.3 bits (60), Expect = 3.7
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 30 GRLERNRQALAK-EARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLE 88
GRL RQ +A + +SD E+ P+ + ++ + + HV+ IC +E
Sbjct: 41 GRLRTVRQVVANGDVSSPSSDVAAEESAAAPKIGKRVRVTAPVRVHHVSKAPDLDICGME 100
Query: 89 RKIKK 93
+K+
Sbjct: 101 GVVKQ 105
>10_08_0736 +
20205934-20206551,20207258-20207426,20207562-20207692,
20208100-20208144,20208145-20208939,20209081-20209128,
20209504-20209620,20210087-20210161
Length = 665
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 130 GFSCVQWNKTIHLTRRRYSSDCWETRTL 157
G +Q NKT+ L YS D WE+ TL
Sbjct: 597 GGKLLQVNKTMELVFASYSFDVWESWTL 624
>04_03_0615 + 18048787-18048865,18048897-18049753
Length = 311
Score = 27.5 bits (58), Expect = 6.5
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 110 RCTMATSEDLGVTNEICSSLGFSCVQWNKTIHLTRRRYSSDCWETRTLVIPAGCECMWPV 169
RCT+ L + I S G +C+ + K + R + + L++ GC+ + V
Sbjct: 82 RCTLLNDLTLSFCSNI-SDPGIACLTYCKKLMSLRLNSIPELTSSGLLLLAVGCKALSSV 140
Query: 170 YRLGDMK 176
Y L D K
Sbjct: 141 Y-LNDCK 146
>11_06_0143 +
20589574-20589684,20590256-20590873,20590943-20591010,
20591159-20591234,20591311-20591372,20591452-20591603,
20591889-20592052,20592129-20592317,20592417-20592538,
20592620-20592827,20593238-20593291,20593457-20593626,
20594265-20594355,20595405-20595529,20596372-20596444,
20596822-20596914,20597482-20597728,20598305-20598364,
20598461-20598590,20599008-20599014
Length = 939
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 21 PDRVLNSVLGRLERNRQAL-AKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTT 78
P R L V LE + + L AKE + D D + V + ++P K+L+ +T
Sbjct: 75 PKRKLQKVSDELEDDMKPLPAKEVHKEEEDDDDDDFVAPSKRKTPVKPPPSKKLKGAST 133
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 97 DEYEYRPAYYEEVRCTMATSEDLGVTNEICSSLGFSCVQW 136
D+++ RP EE++ + T +D + E S FS W
Sbjct: 251 DDWDDRPRTIEEIQAMLQTRKDAALKRERALSYAFSHQIW 290
>01_06_0852 +
32463784-32463834,32463957-32464628,32465515-32465627,
32465999-32466261,32466803-32466924,32467176-32467253,
32467353-32467409,32467590-32467658,32467903-32467947,
32468303-32468398
Length = 521
Score = 27.1 bits (57), Expect = 8.6
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 32 LERNRQALAKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHY 82
L + R+ L KE RL+ + E + Y+E ++ + K+ QKH+
Sbjct: 267 LAKARRHLFKEERLEAEQRRLEEIGPIAYYSEWVEAYKNKDTSREAVQKHF 317
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.409
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,322,455
Number of Sequences: 37544
Number of extensions: 212708
Number of successful extensions: 492
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 11
length of query: 179
length of database: 14,793,348
effective HSP length: 78
effective length of query: 101
effective length of database: 11,864,916
effective search space: 1198356516
effective search space used: 1198356516
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)
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