GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
         (179 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.95 
SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  29   1.7  
SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05)             29   2.9  
SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)                     28   5.1  
SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)                   27   6.7  
SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)                    27   6.7  
SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)                       27   8.8  
SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)                      27   8.8  
SB_31423| Best HMM Match : KH_1 (HMM E-Value=1.7e-09)                  27   8.8  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_21299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2630

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 72  ELRHVTTQKHYPICHLERKIKKLNPDEYEYR-PAYYEEVRCTMATSEDLGVTNEICSSLG 130
           + RH+T Q+ + +CH  RK++ +  D        YY         S D+     +C +LG
Sbjct: 119 DYRHITGQESHGVCH--RKVRLIYGDSQRGTVQVYYGTWFTVCDDSWDINDARVVCKTLG 176

Query: 131 F 131
           F
Sbjct: 177 F 177


>SB_38032| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/39 (28%), Positives = 24/39 (61%), Gaps = 2/39 (5%)

Query: 65  IQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRP 103
           I+  +E +  H+   KH P+  ++R++ +L  ++Y+ RP
Sbjct: 56  IRTKKEWDTGHIANAKHIPVADIDRRLSEL--EKYKARP 92


>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 22/90 (24%), Positives = 43/90 (47%), Gaps = 3/90 (3%)

Query: 31  RLERNRQALAKEARLDNSDCQD-SETVVLPEYTESIQPSREKELRHVTTQKHYPICHLER 89
           ++E     L   + +D+   ++  + +   +Y  ++  ++ KELR    +K   +  +E 
Sbjct: 132 QMEEGYSKLKSASAMDDLQMKELQDQLEAEQYFSTLYKTQVKELREEVDEKTKQVTDIES 191

Query: 90  KIKKLNPDEYEYRPAYYEEVRCTMATSEDL 119
           K+K+L  +E E   A   E+  T A SE L
Sbjct: 192 KVKQLK-EERESLSAQL-ELTLTKADSEQL 219


>SB_51674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 145 RRYSSDCWETRTLVIPAGCECM 166
           +RYS DC  + T  + AG ECM
Sbjct: 187 KRYSDDCCNSTTCKLTAGSECM 208


>SB_14243| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1507

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 28/140 (20%), Positives = 58/140 (41%), Gaps = 4/140 (2%)

Query: 13  EHVLRIPNPDRVLNSVLGRLERNRQAL--AKEARLDNSDCQDSETVVLPEYTESIQPSRE 70
           EH + I    + + +   RLE+ +  L  A +A   +S         + E   S+Q + E
Sbjct: 107 EHEMEITMLKKEIQAERVRLEQRKAKLDVADDASDTSSRGPYPAVEAIQEQMSSLQANYE 166

Query: 71  KELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMATSEDLGVTNEICSSLG 130
           +E++ V  Q    +      ++K    EY++      E++ T A  +++ +  E    + 
Sbjct: 167 EEIQTVKEQLQEQMLRANEAVEKYEQQEYQFH-ENLNELKNTFAQEQEM-MREEHQREMS 224

Query: 131 FSCVQWNKTIHLTRRRYSSD 150
              V + + + L   R+  D
Sbjct: 225 TLRVSYEERLKLQEERHHLD 244


>SB_52431| Best HMM Match : C_tripleX (HMM E-Value=1.8e-05)
          Length = 471

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 4/97 (4%)

Query: 50  CQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEEV 109
           C  + + +LP    +I P     L++       PIC    + K ++PD   Y      + 
Sbjct: 96  CNQARSALLPHKQSAIGPGLLFYLKNKVQSG--PICSSNSRTKCISPDLLFYLTNKVHQA 153

Query: 110 RCTMATSEDLGVTNEICSSLG-FSCVQWNKTIHLTRR 145
           R  +   E    +  ICSS     C+  +   +LT +
Sbjct: 154 RSALLPHEQ-SASGPICSSTSRTKCISPDLLFYLTNK 189


>SB_39770| Best HMM Match : TolA (HMM E-Value=0.33)
          Length = 732

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 18/69 (26%), Positives = 29/69 (42%)

Query: 32  LERNRQALAKEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKI 91
           L+  R+ L +E     S  +D +   L +  ES+    EKE R +  + H  +     K+
Sbjct: 320 LDAVREELEEEQEEKESRLRDEKEQSLRKLRESLAREHEKEKRKIEEEYHAALDEQREKL 379

Query: 92  KKLNPDEYE 100
            K    E E
Sbjct: 380 DKEKDAEIE 388


>SB_39606| Best HMM Match : DUF164 (HMM E-Value=0.47)
          Length = 626

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 5   EESARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTES 64
           ++  RD+ E    + N  R L++ +G+L+   Q L+   +L ++D  ++  V L E  + 
Sbjct: 191 KKDVRDWKEKNNSLTNTMRELSNTIGQLQAKEQELSTRLKLKDNDIMEA-NVRLGEMQQK 249

Query: 65  IQ 66
           I+
Sbjct: 250 IR 251


>SB_8591| Best HMM Match : DUF601 (HMM E-Value=0.23)
          Length = 3368

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 41   KEARLDNSDCQDSETVVLPEYTESIQPSREKELRHVTTQKHYP 83
            K+  L+N++ +DSE     E  + + P + K +R   T +  P
Sbjct: 3159 KKVNLNNTNKKDSELTETQEIVQEVAPKQRKSVRFSDTVQDTP 3201


>SB_5000| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 1050

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 106 YEEVRCTMATSEDLGVTNEICSS----LGFSCVQWNKTIHLTRRRYSSDCWET 154
           YE V CT   SE+LG T   C S     G SC   N+           +C  T
Sbjct: 384 YEGVTCTRDKSEELGYTCGACPSGRTGDGVSCADINECADPADNNCPQECENT 436


>SB_55657| Best HMM Match : EGF_CA (HMM E-Value=0)
          Length = 868

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 106 YEEVRCTMATSEDLGVTNEICSS----LGFSCVQWNKTIHLTRRRYSSDCWET 154
           YE V CT   SE+LG T   C S     G SC   N+           +C  T
Sbjct: 210 YEGVTCTRDKSEELGYTCGACPSGRTGDGVSCADINECADPADNNCPQECENT 262


>SB_31423| Best HMM Match : KH_1 (HMM E-Value=1.7e-09)
          Length = 165

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 18  IPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQ 66
           IP P   + +V+G+ ++N + + K   +  S   D + V+L    E +Q
Sbjct: 107 IPMPAVAIAAVIGKKKKNLEYIEKMTNIRPSIDSDQDCVILEGSAEDVQ 155


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 41  KEARLDNSDCQDSETVVLPEYT--ESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDE 98
           KE R+ NSD + ++TV+ PE T  +   P R ++ + +  + +  +              
Sbjct: 246 KEIRVTNSDKESNQTVLDPETTTEKPCPPPRNRKKKIIKNEAYTSLRPSLVTYLDKETIS 305

Query: 99  YEYRPAYYEEVRCT 112
            +Y P++ +EV+ T
Sbjct: 306 SKYLPSHTQEVQVT 319


>SB_16551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 831

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 13/49 (26%), Positives = 25/49 (51%)

Query: 18  IPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESIQ 66
           IP P   + +V+G+ ++N + + K   +  S   D + V+L    E +Q
Sbjct: 237 IPMPAVAIAAVIGKKKKNLEYIEKMTNIRPSIDSDQDCVILEGSAEDVQ 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,522,429
Number of Sequences: 59808
Number of extensions: 283053
Number of successful extensions: 778
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 18
length of query: 179
length of database: 16,821,457
effective HSP length: 78
effective length of query: 101
effective length of database: 12,156,433
effective search space: 1227799733
effective search space used: 1227799733
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)