GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000658-TA|BGIBMGA000658-PA|undefined
         (179 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66514-1|CAA91341.3|  198|Caenorhabditis elegans Hypothetical pr...    64   7e-11
Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical pr...    29   2.5  
DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.      28   4.4  
AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical ...    28   4.4  
Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical ...    27   5.8  
U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical p...    27   7.7  

>Z66514-1|CAA91341.3|  198|Caenorhabditis elegans Hypothetical
           protein K01A11.1 protein.
          Length = 198

 Score = 63.7 bits (148), Expect = 7e-11
 Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 4/99 (4%)

Query: 79  QKHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMATS---EDLGVTNEICSSLGFSCVQ 135
           +K+  +C  +RKI +LN   +E+ P +  EVRC  + S     L    + C      CVQ
Sbjct: 96  EKNEELCESQRKIVELNTQSHEFDPPFVVEVRCLNSQSPIGSLLSGQEQTCFKGMLRCVQ 155

Query: 136 WNKTIHLTRRRYSSDCWETRTLV-IPAGCECMWPVYRLG 173
               +H++RR   S  W   T+   P  C+CMWPV R G
Sbjct: 156 QYADVHVSRRSVGSIHWHPFTIPDAPISCQCMWPVDRYG 194


>Z66514-5|CAA91344.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/77 (28%), Positives = 31/77 (40%)

Query: 49  DCQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEE 108
           D  + E  VL E  E  Q + E      ++QK   I  LE++++       E      E 
Sbjct: 391 DDAEKEVKVLKEQLERAQSALESSQELASSQKADKIQELEKELQNAQKRSSEELETANEM 450

Query: 109 VRCTMATSEDLGVTNEI 125
           VR   AT E+     EI
Sbjct: 451 VRSLTATLENSNSETEI 467


>Z34801-9|CAA84332.1| 1133|Caenorhabditis elegans Hypothetical
           protein F59A2.6 protein.
          Length = 1133

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 22/77 (28%), Positives = 31/77 (40%)

Query: 49  DCQDSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKLNPDEYEYRPAYYEE 108
           D  + E  VL E  E  Q + E      ++QK   I  LE++++       E      E 
Sbjct: 391 DDAEKEVKVLKEQLERAQSALESSQELASSQKADKIQELEKELQNAQKRSSEELETANEM 450

Query: 109 VRCTMATSEDLGVTNEI 125
           VR   AT E+     EI
Sbjct: 451 VRSLTATLENSNSETEI 467


>DQ338465-1|ABC67522.1|  690|Caenorhabditis elegans KEL-8 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 16 LRIPNPDRVLNSVLGRLERNRQALAKEARLDNSD 49
          +R+ N +R L   +  L +N + L +  RL+N D
Sbjct: 18 VRVENGERCLIEAMDELNKNEKGLYRPVRLENGD 51


>AF067946-5|AAC17684.4|  690|Caenorhabditis elegans Hypothetical
          protein W02G9.2 protein.
          Length = 690

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 16 LRIPNPDRVLNSVLGRLERNRQALAKEARLDNSD 49
          +R+ N +R L   +  L +N + L +  RL+N D
Sbjct: 18 VRVENGERCLIEAMDELNKNEKGLYRPVRLENGD 51


>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 16/43 (37%), Positives = 21/43 (48%)

Query: 52  DSETVVLPEYTESIQPSREKELRHVTTQKHYPICHLERKIKKL 94
           D+ETV +   T   +P  E      +T K Y   HLE +I KL
Sbjct: 548 DTETVYVSSVTPMYRPVFENMGHLESTTKSYDPLHLEMEIAKL 590


>AF016683-7|AAM97999.1|  609|Caenorhabditis elegans Hypothetical
           protein K09F6.9 protein.
          Length = 609

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 28/114 (24%), Positives = 44/114 (38%), Gaps = 1/114 (0%)

Query: 6   ESARDFIEHVLRIPNPDRVLNSVLGRLERNRQALAKEARLDNSDCQDSETVVLPEYTESI 65
           E  +  +E   +  N +RV       +ER+RQA A+   L+    +  E         + 
Sbjct: 327 EKEKRELEEKQKKENLERVEKERREHIERHRQAEARAKALEKEKRELEEKQKKENLERAT 386

Query: 66  QPSREKELRHVTTQ-KHYPICHLERKIKKLNPDEYEYRPAYYEEVRCTMATSED 118
           Q  RE   RH   Q +H  +  LE K K+      E +    EE +    T  +
Sbjct: 387 QKEREHIERHREAQERHERLQALEAKDKEDERAREEDKAKAREEAKSKKDTKAE 440


>U97193-15|AAB52443.1| 1932|Caenorhabditis elegans Hypothetical
            protein C06A5.1 protein.
          Length = 1932

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 112  TMATSEDLGVTNEICSSLGFSCVQWNKTIHLTRRRYSSDC 151
            +M TS+D  V + IC +L   C+Q + ++     +Y   C
Sbjct: 1031 SMNTSDDHTVAHAICQTLSIDCIQLHTSLCEYFLQYVDTC 1070


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.132    0.409 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,699,265
Number of Sequences: 27539
Number of extensions: 199077
Number of successful extensions: 539
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 527
Number of HSP's gapped (non-prelim): 10
length of query: 179
length of database: 12,573,161
effective HSP length: 77
effective length of query: 102
effective length of database: 10,452,658
effective search space: 1066171116
effective search space used: 1066171116
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)