Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
         (661 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    42   2e-05
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             35   0.002
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     30   0.070
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    24   4.6  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 41.5 bits (93), Expect = 2e-05
 Identities = 51/266 (19%), Positives = 112/266 (42%), Gaps = 30/266 (11%)

Query: 9   NPEFTDAVLKLFNGFL-ITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQM 67
           NP   D++ +   GF  + + + G+++  + ++   LG+ +   +G++ ++  HP+D+  
Sbjct: 151 NP-LDDSISQANEGFCAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKAT 209

Query: 68  LLEKLKPRSQVLGPNGELLIPNEPDG-VYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVM 126
           L +++K  + ++ P  E   P   +G    +  GL++  RSF  +   +  RS    Y+ 
Sbjct: 210 LADQIK--NGIVSPQEER--PKGINGRRASLFCGLQKYTRSFAHQSINKEARS--NLYLP 263

Query: 127 CHIEGSFRKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRM 186
            H+  SFR                 R RT  +      +  +F+ V    V + +     
Sbjct: 264 FHLTLSFRDF---------------RDRTTEQQ-----HKAMFLVVTAQPVHSAYKAPEE 303

Query: 187 ESFCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMY 246
                 + TRH+    +   +  +    GY+  ++ G +  +F H +D+ ++      + 
Sbjct: 304 TIISSVFTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVI 363

Query: 247 D-QHRLFGESCYRLITKNGQFIYMRT 271
             +   F    YR   +NG ++ + T
Sbjct: 364 KLEGASFRSKPYRFGIQNGDYVVLET 389


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 35.1 bits (77), Expect = 0.002
 Identities = 30/128 (23%), Positives = 65/128 (50%), Gaps = 9/128 (7%)

Query: 9   NPEFTDAVLKLFNGFL-ITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQM 67
           NP   D++ +   GF  + + + G+++  + ++   LG+ +   +G++ ++  HP+D+  
Sbjct: 146 NP-LDDSISQANEGFCAVISMHDGLVLYTTPSICTALGYLKDAWIGRSFIDYVHPKDKAT 204

Query: 68  LLEKLKPRSQVLGPNGELLIPNEPDG-VYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVM 126
           L +++K  + ++ P  E   P   +G    +  GL++  RSF  +   +  RS    Y+ 
Sbjct: 205 LADQIK--NGIVSPQEER--PKGINGRRASLFCGLQKYTRSFAHQSINKEARS--NLYLP 258

Query: 127 CHIEGSFR 134
            H+  SFR
Sbjct: 259 FHLTLSFR 266


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 29.9 bits (64), Expect = 0.070
 Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 1/80 (1%)

Query: 193 YRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYD-QHRL 251
           + TRH+    +   +  +    GY+  ++ G +  +F H +D+ ++      +   +   
Sbjct: 16  FTTRHNATCYLSHVDPDVVQYFGYLPQDMVGRSLFDFYHPEDLPFIKDIYETVIKLEGAS 75

Query: 252 FGESCYRLITKNGQFIYMRT 271
           F    YR   +NG ++ + T
Sbjct: 76  FRSKPYRFGIQNGDYVVLET 95



 Score = 28.3 bits (60), Expect = 0.21
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query: 36 VSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
          V  +V QY G+   D++G++L +  HP D
Sbjct: 29 VDPDVVQYFGYLPQDMVGRSLFDFYHPED 57


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 264 GQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGE 296
           G  +Y+   G +++ +D K ++T +    V+GE
Sbjct: 136 GSIVYVMEEGKVEVSRDGKYLST-LAPGKVLGE 167


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,158
Number of Sequences: 429
Number of extensions: 8629
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 661
length of database: 140,377
effective HSP length: 62
effective length of query: 599
effective length of database: 113,779
effective search space: 68153621
effective search space used: 68153621
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)