GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
         (661 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory recept...    27   0.54 
AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory recept...    27   0.54 
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.3  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    25   1.3  
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    25   1.7  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    25   2.2  
AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450 ...    24   2.9  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   5.1  
DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   6.7  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    23   6.7  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    23   6.7  

>AM292374-1|CAL23186.2|  659|Tribolium castaneum gustatory receptor
           candidate 53 protein.
          Length = 659

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 302 LIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVE 335
           L+KM+K R  +L K  + L++Y +   N++ PVE
Sbjct: 460 LVKMLKIRFVILNKQINNLIEYFQ--KNKIGPVE 491


>AM292345-1|CAL23157.2|  384|Tribolium castaneum gustatory receptor
           candidate 24 protein.
          Length = 384

 Score = 26.6 bits (56), Expect = 0.54
 Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 2/34 (5%)

Query: 302 LIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVE 335
           L+KM+K R  +L K  + L++Y +   N++ PVE
Sbjct: 185 LVKMLKIRFVILNKQINNLIEYFQ--KNKIGPVE 216


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 517 LDDFIFP-ELIDEPQGIQS-PTQIKYHLVIDSEQDLNEAFQQANKNSAANLE-SDLN-KI 572
           L++ + P  +++ P   +S P ++K+ L +    D++E  Q    N+  NLE +D N K 
Sbjct: 8   LNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKW 67

Query: 573 GMKRPNNFSEVASSNKKISNPNIVAENDFSSEF 605
                    ++  +  K+  P+++  N     F
Sbjct: 68  NESEYGGVKDLRITPNKLWKPDVLMYNSADEGF 100


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 517 LDDFIFP-ELIDEPQGIQS-PTQIKYHLVIDSEQDLNEAFQQANKNSAANLE-SDLN-KI 572
           L++ + P  +++ P   +S P ++K+ L +    D++E  Q    N+  NLE +D N K 
Sbjct: 8   LNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKW 67

Query: 573 GMKRPNNFSEVASSNKKISNPNIVAENDFSSEF 605
                    ++  +  K+  P+++  N     F
Sbjct: 68  NESEYGGVKDLRITPNKLWKPDVLMYNSADEGF 100


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 21/93 (22%), Positives = 43/93 (46%), Gaps = 4/93 (4%)

Query: 517 LDDFIFP-ELIDEPQGIQS-PTQIKYHLVIDSEQDLNEAFQQANKNSAANLE-SDLN-KI 572
           L++ + P  +++ P   +S P ++K+ L +    D++E  Q    N+  NLE +D N K 
Sbjct: 8   LNNLLGPYNVLERPVANESEPLEVKFGLTLQQIIDVDEKNQILTTNAWLNLEWNDYNLKW 67

Query: 573 GMKRPNNFSEVASSNKKISNPNIVAENDFSSEF 605
                    ++  +  K+  P+++  N     F
Sbjct: 68  NESEYGGVKDLRITPNKLWKPDVLMYNSADEGF 100


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 15/57 (26%), Positives = 27/57 (47%)

Query: 21  NGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQ 77
           N F I  T   + +   +   +Y    +LD+ G   VNL +P D +++L   K  ++
Sbjct: 44  NLFDIMRTPEQLFLAERERGLKYYPIYKLDVCGNGGVNLLNPEDVELVLTDTKQNTK 100


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)

Query: 556 QANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNP 593
           QAN   +    S+L  +  ++ NN + V+S+N++I  P
Sbjct: 67  QANSPPSPPAPSELPALKSRKLNNNNVVSSTNQEIRGP 104


>AY337337-2|AAP94193.1|  491|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 491

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 11/36 (30%), Positives = 20/36 (55%)

Query: 42  QYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQ 77
           +Y    +LD+ G   VNL +P D +++L   K  ++
Sbjct: 65  KYYPIYKLDVCGTGGVNLLNPEDVELVLTDTKQNTK 100


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 5.1
 Identities = 7/25 (28%), Positives = 15/25 (60%)

Query: 93  GVYKVVEGLRREKRSFTIRLKKQGP 117
           G Y ++  +R+E   + ++L+  GP
Sbjct: 871 GKYPLINAMRQELEGYKVKLEYDGP 895


>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)

Query: 471 LNVTSNNLMFSEAVAVEQYNP 491
           L+ ++N L+FSE +    YNP
Sbjct: 139 LDPSTNELVFSEVLLFLDYNP 159


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 302 LIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVEDPKQLVNVVLHMVT 349
           ++ ++K R   +    D + + +  T NQ VP    K LV +  ++VT
Sbjct: 183 ILTVLKARFEAINNIIDSI-RQNSQTRNQAVPTGTIKTLVQMHSNLVT 229


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 302 LIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVEDPKQLVNVVLHMVT 349
           ++ ++K R   +    D + + +  T NQ VP    K LV +  ++VT
Sbjct: 183 ILTVLKARFEAINNIIDSI-RQNSQTRNQAVPTGTIKTLVQMHSNLVT 229


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,327
Number of Sequences: 317
Number of extensions: 6494
Number of successful extensions: 22
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 12
length of query: 661
length of database: 114,650
effective HSP length: 61
effective length of query: 600
effective length of database: 95,313
effective search space: 57187800
effective search space used: 57187800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)