Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
(661 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 33 0.096
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 32 0.22
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 32 0.29
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 32 0.29
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 32 0.29
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 31 0.51
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos... 31 0.67
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 30 1.2
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac... 29 1.6
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 29 1.6
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 29 2.1
SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces p... 29 2.7
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ... 28 3.6
SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5 |Schizo... 28 3.6
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc... 28 3.6
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 4.8
SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 28 4.8
SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|c... 28 4.8
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 27 6.3
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 6.3
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S... 27 8.3
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 33.5 bits (73), Expect = 0.096
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 565 LESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVTLNTQIETA 624
LE DL+ + NFS++ S + P + +D A +E LDD + + +I T
Sbjct: 24 LELDLDGSVLFASTNFSQITGSLELTGKPAALLSSDQEIFNAAIEQLLDDDSHSVKIHTV 83
Query: 625 IK---SLEQTIDPSFPELLISSEVQEI 648
I SLE+ + E+ + S+ E+
Sbjct: 84 ISKLPSLEENVFVQDEEMELQSKSVEL 110
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 32.3 bits (70), Expect = 0.22
Identities = 27/129 (20%), Positives = 60/129 (46%), Gaps = 3/129 (2%)
Query: 508 LNVQENEITLDDFIFPELIDEPQGIQSPTQIKYHLVIDSE-QDLNEAFQQANKNSAANLE 566
L + E ++ + + I+E + + TQ+K H ++D++ +++ E Q KN A E
Sbjct: 103 LTLVEKQLEEQSTSYQKEIEEVRNEKEATQVKIHELLDAKWKEIAELKTQIEKNDQALSE 162
Query: 567 SDLNKIGMKRPNNFSEVASSN-KKISNPNIVAENDFSSEFACLESFLDDVTL-NTQIETA 624
+ + + + +N +K+ + E A E L ++++ N Q+E +
Sbjct: 163 KNHEVMVSNQALQMKDTNLTNLEKLFADSREQLETKCKELAAAEQQLQELSVHNQQLEES 222
Query: 625 IKSLEQTID 633
IK + +I+
Sbjct: 223 IKQVSSSIE 231
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 31.9 bits (69), Expect = 0.29
Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 6/96 (6%)
Query: 474 TSNNLMFSEAVAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQ 533
T+N E+ A E + G+T S V+ ++ + +E LD+ E+ D P+ +
Sbjct: 3942 TANQSDLDESEARELESDMNGVTKDSV-VSENENSDSEEENQDLDE----EVNDIPEDLS 3996
Query: 534 SPTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDL 569
+ K +E+DL E Q++N+ SAAN ESDL
Sbjct: 3997 NSLNEKLWDE-PNEEDLLETEQKSNEQSAANNESDL 4031
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 31.9 bits (69), Expect = 0.29
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 332 VPVEDPKQLVNVVLHMVTDLPTSKPGIALKQNNPASPSHNLSIIPPKKERIVSGVE 387
+P+ P +V H +LP + P I NN ASP+ + P + V G++
Sbjct: 216 LPISPPSDFFSVHSH---NLPNAPPSIPANSNNSASPNQRIKASPKHADTDVLGLD 268
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 31.9 bits (69), Expect = 0.29
Identities = 22/91 (24%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 545 DSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS- 603
+ Q + E +QA KNS+ N +++ + ++ + S+N + +VAE +F S
Sbjct: 1616 EKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVEEKLKENSANFDVKLKKVVAETEFRSK 1675
Query: 604 -EFACLESFLDDVTLN-TQIETAIKSLEQTI 632
+ + E D+ TQ+E I++L + +
Sbjct: 1676 AKISVYEKKTRDLQNKITQLEETIENLNKQL 1706
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 31.1 bits (67), Expect = 0.51
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 415 QDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVT 474
+D +LDI + L AT + + + ES E+ D LCQ + E LNV
Sbjct: 438 KDLVLDIERLKNDLNATRKKNGVY-LAESTYKELMDRVQNKDLLCQEQARKLEVLDLNVK 496
Query: 475 SN 476
S+
Sbjct: 497 SS 498
>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 30.7 bits (66), Expect = 0.67
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 418 ILDINMINQPLFATENSSRIQEIDES-NTFEIF 449
+ D + +P+ A ENSS IQ +++S NTF +
Sbjct: 178 LCDFGSVTEPMHAAENSSEIQALEKSINTFTTY 210
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/110 (22%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 441 DESNTFEIFDMPSTST-ALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPE-FGLTAT 498
++S++ + D P +T Q +P+YFE + + S+ + + +E + F L A+
Sbjct: 768 EQSSSVNLIDFPMANTNGESQTQPHYFEVSEEEINSSMDLGRQQDVLECIDHVLFQLEAS 827
Query: 499 SPDVTYHDYLNVQENEITLDDF---IFPELIDEPQGIQSPTQIKYHLVID 545
++ + +N++ F + L D QG++S +I HL++D
Sbjct: 828 LGRISNSEDRLGSDNDLIRRLFSGKLKQTLNDASQGVRSNYEIFSHLIVD 877
>SPAC1751.01c |gti1||gluconate transporter inducer
Gti1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 29.5 bits (63), Expect = 1.6
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 526 IDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDLNK-IGMKRPNNFSEVA 584
ID+ S K L D++ D+NE + + + NL + N+ +G N+ SE+A
Sbjct: 526 IDQSSYNMSLAASKQFLTSDTQPDVNENYSFISNSIPKNLSTSWNQNMGYHVTNSNSELA 585
Query: 585 SSN 587
S N
Sbjct: 586 SQN 588
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 544 IDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVA-SSNKKISNPNIVAENDFS 602
++ +Q L AF + +S +ES++ K+ PN+ S +A N++ N ++ EN+ S
Sbjct: 62 LNRKQALFNAFMHDSSSSLNTMESNIEKVNGLFPNDNSVIALKPNEEKLNSSLSVENNDS 121
Query: 603 S 603
+
Sbjct: 122 T 122
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 545 DSEQDLNEAFQQANKNSAANLESD-LNKIGMKRPNNFSEV 583
+SE +L +AF++A KNS A + D ++ I KR EV
Sbjct: 301 ESESNLRKAFEEAEKNSPAIIFIDEIDSIAPKREKTNGEV 340
>SPAC20G4.03c |hri1||eIF2 alpha kinase Hri1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 704
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 505 HDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAAN 564
HD+L+ E +L + P Q T +H ++ +E + +A + + N
Sbjct: 628 HDFLDSMPEEASLIRSMLSSSNKRPTAAQLLTSNLFHDLVVNELHVYQALLEDAEKRNNN 687
Query: 565 LESDLNKIGMKRPN 578
L+++LN + + PN
Sbjct: 688 LKAELNILRVLNPN 701
>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
zf-fungal binuclear cluster type |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 977
Score = 28.3 bits (60), Expect = 3.6
Identities = 27/103 (26%), Positives = 52/103 (50%), Gaps = 18/103 (17%)
Query: 550 LNEAFQQANKNSAANLESDLNK-----------IGMKRPNNFSEVAS-SNKKISNPNIVA 597
LN +Q +KN AAN +L++ + P ++ +AS +N+ +S+P IV
Sbjct: 124 LNHQYQHQHKNVAANSIDNLSRQYSQPNHINTHDSVNSPPSYGIMASATNQPLSHPTIVP 183
Query: 598 ENDFSSEFACLESFLDDVTLNTQIETAIKSLEQ--TIDPSFPE 638
++ SS L + ++++ N Q+ SL + +DP+ P+
Sbjct: 184 SSNSSS----LLNSTNNISHNPQVSLMSASLSKNLVLDPASPK 222
>SPAC14C4.02c |smc5|spr18|Smc5-6 complex SMC subunit Smc5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1065
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/51 (25%), Positives = 29/51 (56%)
Query: 296 EEEGKRLIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVEDPKQLVNVVLH 346
+ E ++L + + + +LL++TND L + +L+P+ + +QL + H
Sbjct: 647 QNEERKLQEKVNEHESLLSRTNDILSTLRKERDEKLIPIHEWQQLQERIEH 697
>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 607 CLESFLDDVTLNTQIETAIKSLEQTIDPSFP 637
CL + LDD+ L Q ET I + E + +FP
Sbjct: 702 CLVNGLDDIGLTLQKETMIDAFEAAREENFP 732
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 4.8
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 544 IDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS 603
+ SE D E+ S+ S ++ ++V S NK + N N+ A++D S
Sbjct: 350 VPSENDTTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKES 409
Query: 604 E 604
E
Sbjct: 410 E 410
>SPAC17A2.08c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 270
Score = 27.9 bits (59), Expect = 4.8
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 278 EKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLKYDEGTSNQLVPVEDP 337
+++ + + T+ I E G +L+ + L +T D++ DEG S VE+
Sbjct: 77 DREGRKRNIAMMTDNYISLETGDQLMLAQNHKEEKLLQTEDEI--QDEGYSGFENYVEES 134
Query: 338 KQLVNVVLHMVTDLPTSKPGIALKQNN 364
++L + H L T +A+ Q N
Sbjct: 135 EKLQEIYHHSSESLRTRSIQMAVDQKN 161
>SPBC83.08 |||AAA family ATPase Rvb2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 465
Score = 27.9 bits (59), Expect = 4.8
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Query: 84 ELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCHIEGSFRKADGANHTL 143
E ++ + + K V + + RSF+ R + T++V C +G +K HT+
Sbjct: 179 EKVLAGDVISIDKSVGRVTKLGRSFS-RARDYDAMGADTRFVQCP-QGEIQKRKEVVHTV 236
Query: 144 SRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRME 187
S V SRT+G SG+ VR + T SE R E
Sbjct: 237 SLHDIDVINSRTQGFLALFSGDTGEIKPEVREQINTKVSEWREE 280
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 541 HLVIDSEQDLN--EAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAE 598
H+ S+ L+ +A A S A+ L G + + S+ SSNK+ S+P I
Sbjct: 61 HVFQHSQSPLSHKDASLLATMPSVASSNPSLISSGSSQTGSPSQSLSSNKEPSSPGISPS 120
Query: 599 NDFSSE 604
ND S+
Sbjct: 121 NDSQSQ 126
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.5 bits (58), Expect = 6.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 525 LIDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAANLE-SDLNKIGMKRPNNFS-- 581
L + P + P HL S DL ++ + SA N+E S L + RP++ S
Sbjct: 387 LEEAPMNLTRPINANPHLTNHSPNDLTNGEEEMDTTSAFNIENSHLTLLSPIRPSSRSME 446
Query: 582 -EVASSNKKISNPN 594
++ + IS+ N
Sbjct: 447 EQIMDLTQPISSTN 460
>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 551 NEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLES 610
N+A Q +N++S+ N S++ K + P+N +SS++ + PN + D + A S
Sbjct: 230 NDASQPSNQDSSLN--SNIVKPPLP-PSNVQSNSSSSENVPKPNAETQEDLPTIDAHESS 286
Query: 611 FLDDV 615
++V
Sbjct: 287 LYENV 291
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,074,397
Number of Sequences: 5004
Number of extensions: 135057
Number of successful extensions: 448
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 432
Number of HSP's gapped (non-prelim): 28
length of query: 661
length of database: 2,362,478
effective HSP length: 77
effective length of query: 584
effective length of database: 1,977,170
effective search space: 1154667280
effective search space used: 1154667280
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)
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