Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
(661 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0471 - 16292916-16293209,16294558-16294803,16297557-162976... 31 2.9
06_01_0641 - 4652380-4653771,4653850-4654521,4654536-4654707,465... 30 5.1
02_05_0702 - 31027908-31027958,31028062-31029311,31029665-310298... 30 5.1
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 30 5.1
10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643 29 8.9
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426... 29 8.9
>04_03_0471 -
16292916-16293209,16294558-16294803,16297557-16297692,
16297765-16297983,16298194-16298572,16298967-16299225,
16300044-16300114,16300604-16300625
Length = 541
Score = 31.1 bits (67), Expect = 2.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 541 HLVIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEV 583
H I+ + LNEA Q+ ++++ + L K +K NNF E+
Sbjct: 302 HATIEESRKLNEAIQRWDESAIPRVPEYLKKFYIKLLNNFKEI 344
>06_01_0641 -
4652380-4653771,4653850-4654521,4654536-4654707,
4655515-4655690
Length = 803
Score = 30.3 bits (65), Expect = 5.1
Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLN 472
+P + +LD N +++ + +R+ + ++ + M ST+ C ++P Y + G L
Sbjct: 606 KPGNILLDRNYVSK--ISDVGLARLVPPNVADNVTQYRMTSTAGTFCYIDPEYQQTGMLG 663
Query: 473 VTSNNLMFSEAVAVEQY---NPEFGLT 496
V S+ ++S V + Q P GLT
Sbjct: 664 VKSD--VYSLGVMLLQIITAKPPMGLT 688
>02_05_0702 - 31027908-31027958,31028062-31029311,31029665-31029842,
31029955-31030017,31031597-31031704,31031772-31031836,
31031928-31032015,31032104-31032157,31032234-31032380,
31033358-31033429,31034077-31034226,31034317-31034430,
31034762-31034875,31035925-31036077,31037437-31037529,
31038202-31038318,31038984-31039086,31039192-31039376,
31039448-31039522,31040451-31040534,31041547-31041588,
31041668-31041847,31042109-31042162,31042239-31042280,
31042869-31042967,31043040-31043174,31043325-31043427,
31045061-31045134,31045227-31045270,31045393-31045471,
31045592-31045705,31045842-31045946,31046027-31046161,
31046447-31046546,31046870-31046883,31046936-31047004,
31047079-31047182,31047299-31047347,31047931-31048023,
31048102-31048210,31048619-31048755,31048851-31048928,
31049015-31049104,31049402-31049467,31049546-31049638,
31049711-31049839,31050024-31050122,31051366-31051512,
31051605-31051910
Length = 2050
Score = 30.3 bits (65), Expect = 5.1
Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 544 IDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS 603
+ S ++ +E FQ + E+ NK M + + E+A+SN+ A DF +
Sbjct: 959 LKSRKENDELFQLKEELEKYKEEAQANKSYMLQ---YKEIANSNESALKQMESALQDFKT 1015
Query: 604 EFACLESFLDDVTLNTQIETAIKSLEQTIDPSFPELLISSEVQE 647
E ++ L+D T++ T I LE+ E + E +E
Sbjct: 1016 ESETIKKSLEDEI--TKLRTKISELEKCYIMKCEEAASAIEAKE 1057
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 30.3 bits (65), Expect = 5.1
Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 7/148 (4%)
Query: 503 TYHDYLNVQENEITLDDFIFPELID---EPQGIQSPTQIKYHLVIDSEQDLNEAFQQANK 559
T+ DYL +Q + ++ P+ +D + I + ++ + E+ L E NK
Sbjct: 564 TFPDYLVLQMRKFVMEAGWVPKKLDVYVDVPDIIDISHMRSKGIQPGEELLPEGASGDNK 623
Query: 560 NSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVTLNT 619
+ + + + F+ + IS N E + L S +DD +N
Sbjct: 624 AEPVHPVASEDIVSQLASMGFNYLHCQKAAISTSNTGVEEAMN----WLLSHMDDPDIND 679
Query: 620 QIETAIKSLEQTIDPSFPELLISSEVQE 647
I ++ EQT+D + + L+S QE
Sbjct: 680 PISKDSQAAEQTVDETSVQTLVSFGFQE 707
>10_07_0086 - 12755485-12756540,12756994-12757283,12757391-12757643
Length = 532
Score = 29.5 bits (63), Expect = 8.9
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 477 NLMFSEAVAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQSPT 536
NL+ + A+ E P A P V +H L+ ++ ++ PEL D G+Q+
Sbjct: 372 NLLPTAAIPPEPMMPPTSSPAPPPAVDHHHRLS-PPHDAAGSNYNHPELADYNGGVQAQH 430
Query: 537 QIKYH 541
+ +YH
Sbjct: 431 EHQYH 435
>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
4263151-4263315,4263416-4263544,4263758-4263858,
4264527-4264596,4265080-4265331,4265828-4265897,
4266281-4266341,4266916-4267003,4267746-4267830,
4268168-4268234,4268442-4268559,4268843-4268923,
4269022-4269267,4269670-4269771,4269847-4269914,
4270040-4270171,4270283-4270430,4270504-4270790,
4270920-4271067,4271156-4271331,4271407-4271518,
4271614-4271667,4273134-4273244,4273317-4273478,
4273627-4273814,4273948-4274137,4274297-4274464,
4274832-4274912
Length = 1359
Score = 29.5 bits (63), Expect = 8.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 16 VLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPR 75
V+ L NGFL T T ++ + V +Y+G P+ +L G + P + + E++ R
Sbjct: 1071 VVPLLNGFLTTFTETEKEMISVERVVEYVGIPQEELHGSESPHSGWPTEGNIEFERVTLR 1130
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,909
Number of Sequences: 37544
Number of extensions: 747268
Number of successful extensions: 1642
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 6
length of query: 661
length of database: 14,793,348
effective HSP length: 87
effective length of query: 574
effective length of database: 11,527,020
effective search space: 6616509480
effective search space used: 6616509480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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