Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
(661 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14) 69 9e-12
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047) 66 8e-11
SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 6e-06
SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 1e-05
SB_27525| Best HMM Match : PAS (HMM E-Value=0.99) 47 6e-05
SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05) 42 0.002
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.005
SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09) 40 0.008
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0) 38 0.026
SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083) 38 0.026
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 36 0.078
SB_744| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.10
SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.18
SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.18
SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013) 35 0.18
SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098) 35 0.18
SB_36873| Best HMM Match : HTH_10 (HMM E-Value=3.4) 35 0.18
SB_47595| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.42
SB_14931| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.42
SB_6309| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.42
SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023) 34 0.42
SB_31232| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.42
SB_29919| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.42
SB_6944| Best HMM Match : IF4E (HMM E-Value=9.6) 34 0.42
SB_54740| Best HMM Match : DUF1623 (HMM E-Value=9.3) 33 0.73
SB_20201| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.73
SB_13530| Best HMM Match : RCSD (HMM E-Value=3.1) 32 1.7
SB_21974| Best HMM Match : Ail_Lom (HMM E-Value=4.4) 31 2.2
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 31 2.2
SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06) 31 2.2
SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6) 31 2.9
SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16) 31 3.9
SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024) 30 5.1
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 30 5.1
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 5.1
SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0) 30 6.8
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 30 6.8
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 30 6.8
SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2) 29 9.0
SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 9.0
SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19) 29 9.0
>SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)
Length = 468
Score = 69.3 bits (162), Expect = 9e-12
Identities = 56/234 (23%), Positives = 112/234 (47%), Gaps = 22/234 (9%)
Query: 21 NGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQVLG 80
NGFL + G + +S+NV Q G + +++G+N ++L HP DR ++ K L
Sbjct: 223 NGFLFALSSNGAVTFISRNVFQLFGHKQEEVIGKNFLDLIHPDDRNLVFNK-------LS 275
Query: 81 PNGELLIPNEPDGVYKVVEGLRREKRSFTIRLK--KQGPRSEPTQYVMCHIEGSFRKADG 138
+ E +I + ++ + L + K +F I++ K G Y H+ G +
Sbjct: 276 EDPEPVIVHIDASDFQPSKRLPK-KHTFDIQMSFGKDG-------YCPIHVCGYSNCWES 327
Query: 139 ANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMESFC-MEYRTRH 197
+ ++ V S+ E P + N +V +G++ S +H S + C +E+ RH
Sbjct: 328 SESPNAKNNLKVVSSKKSSEVPGIT-NFLVAVGLL--SSPDYHRLSDLNESCNVEFNARH 384
Query: 198 SVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRL 251
++DG+ + + + +TG+ E+ G + ++H +D++ + AL + HR+
Sbjct: 385 TMDGKFLYVDPQSIRLTGFWPSELLGTSLYTYVHMEDLQMLG-ALHESTPPHRV 437
>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
Length = 405
Score = 66.1 bits (154), Expect = 8e-11
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 192 EYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRL 251
++ +RHS DG+ + +QRI + GY+ EV G + ++ H +D+ VA + +
Sbjct: 76 QFTSRHSSDGKFIYVDQRIVSICGYLPQEVIGTSGYDYFHPEDLEIVAQSHKSALQGET- 134
Query: 252 FGESCYRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGE 296
S YR + K+G +I +RTR L +K + VCTN V+ E
Sbjct: 135 -AVSSYRFLCKSGHYIPLRTRSTLFRNPWTKEIEFLVCTNDVLTE 178
>SB_33294| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 983
Score = 50.0 bits (114), Expect = 6e-06
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 190 CMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQH 249
C + +R ++D +IV CE RI Y ++ G++A +F H DV + Q
Sbjct: 215 CNMFVSRVNMDLKIVYCEGRIHKFMDYFAKDIVGISAYDFYHAGDVAVIQGHHAKSKGQ- 273
Query: 250 RLFGESCYRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLI 303
YR + KNG +++M+T+ L + + +C N ++ E E + ++
Sbjct: 274 --IMTKYYRWMNKNGGWVWMQTKCSLIPHPSNPELKQMLCLNYILSEVEHRSIV 325
>SB_25442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1010
Score = 48.8 bits (111), Expect = 1e-05
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 8/84 (9%)
Query: 192 EYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQ-HR 250
E+ +RHS+DG+ +QR++ V GY ++ G +F H DD+ + + YDQ +
Sbjct: 246 EFISRHSLDGKFTFVDQRVTEVLGYQPRDMLGQLCYDFFHPDDLE----HMMESYDQVMK 301
Query: 251 LFGESC---YRLITKNGQFIYMRT 271
L G++ YR +K G ++++RT
Sbjct: 302 LKGQTLSVRYRFRSKTGDWVWLRT 325
Score = 29.9 bits (64), Expect = 6.8
Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 23 FLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQVLGPN 82
F+ + G V + V + LG+ D+LGQ + HP D + ++E QV+
Sbjct: 247 FISRHSLDGKFTFVDQRVTEVLGYQPRDMLGQLCYDFFHPDDLEHMMESY---DQVMKLK 303
Query: 83 GELL 86
G+ L
Sbjct: 304 GQTL 307
>SB_27525| Best HMM Match : PAS (HMM E-Value=0.99)
Length = 448
Score = 46.8 bits (106), Expect = 6e-05
Identities = 23/106 (21%), Positives = 55/106 (51%), Gaps = 1/106 (0%)
Query: 193 YRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLF 252
+ +RH +D + +QC+ R+S + GY E+ G + +F H D+ V + + + +
Sbjct: 42 FTSRHMLDMKFLQCDDRVSSLLGYTREEMIGKSWYSFHHAADLDNVLNTHKMLLTKGQSV 101
Query: 253 GESCYRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEE 298
+ YR + + G +++++T+ ++ + + C N V+G ++
Sbjct: 102 SK-YYRFMVRGGGWVWLQTKANVVYDSKTCQPQFVFCINYVLGGKQ 146
>SB_50387| Best HMM Match : HLH (HMM E-Value=8.2e-05)
Length = 791
Score = 41.5 bits (93), Expect = 0.002
Identities = 30/114 (26%), Positives = 54/114 (47%), Gaps = 9/114 (7%)
Query: 9 NPEFTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQML 68
N F+ L+ +GF++ T G + VS+NV +LG+ + ++ Q++ H D+ M+
Sbjct: 155 NGLFSQLSLEALDGFIVVITQDGQLFYVSENVRDFLGYSQAAVIHQSIYKFLHIDDQDMV 214
Query: 69 LEKLKPRSQV---LGP------NGELLIPNEPDGVYKVVEGLRREKRSFTIRLK 113
KL S V LG + + + +G + L + R+FT R+K
Sbjct: 215 KLKLAWPSSVSKELGKCDSETRRRDSVSGKQENGKVSELTDLEKLNRTFTCRMK 268
>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 671
Score = 40.3 bits (90), Expect = 0.005
Identities = 70/371 (18%), Positives = 148/371 (39%), Gaps = 31/371 (8%)
Query: 9 NPEFTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQML 68
+PE +++ +GF+++ G I VS N+ LG+ ++ L RD
Sbjct: 93 DPELCQLIIEAMDGFIMSIDSSGSISFVSDNITSQLGYLPEKIINTRLSEYLESRD---- 148
Query: 69 LEKLKPRSQVLGPNGELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCH 128
E + R Q L + EL++ P+ + F++ + GP + T +
Sbjct: 149 CEAMDVRLQRLYEH-ELVMYRLPESSATATP--LSDLFDFSLCMC-YGPLVDSTGFAAMR 204
Query: 129 IEGSFRKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMES 188
G +H + ++ R+ + + RP+ + S S +
Sbjct: 205 CIAQAYVMQGVSHDMKTKPEITRKLNLV---------TLCCLETERPT-KLVSSPSLKK- 253
Query: 189 FCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQ 248
ME+ R +++ + +QR V GYM++E+ G + +H +D+ + + + +
Sbjct: 254 --MEFTARLTLNWKFTHLDQRGLSVIGYMSNELVGSSLYQNIHPNDLENITRYHKILVYK 311
Query: 249 HRLFGESC-YRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEE-GKRLIKMM 306
R+ +C YR +TK ++++R+ ++ + + + T+T + E + +
Sbjct: 312 GRV--NTCYYRFLTKGQAYLWIRSCCYISYNQWNSRPEFIIATSTTASQAEVTANQARTL 369
Query: 307 KKRIALLTKTNDK-LLKYDEGTSNQLVPVEDPKQLVNVVLHMVTDLPTS---KPGIALKQ 362
++ + K L+ G S+ P + P + +DLP S G +
Sbjct: 370 QQDLQSFENLEQKQLISKTSGVSSPSGPTDMPSRSSGE--STFSDLPMSDAVSVGSEPQN 427
Query: 363 NNPASPSHNLS 373
+ P SP +S
Sbjct: 428 SKPLSPGSIIS 438
>SB_27523| Best HMM Match : 7tm_1 (HMM E-Value=3.5e-09)
Length = 666
Score = 39.5 bits (88), Expect = 0.008
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 18 KLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPR 75
K +GF+ G + +S+NV YLG ++++ G +L HP D + L +L R
Sbjct: 543 KALDGFVYVIAQDGQCLYISENVTYYLGLSQIEVTGNSLYKYVHPCDHEELANQLGGR 600
>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
Length = 491
Score = 37.9 bits (84), Expect = 0.026
Identities = 32/133 (24%), Positives = 62/133 (46%), Gaps = 9/133 (6%)
Query: 267 IYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIAL-LTKTNDKLLKYDE 325
+++RT + + K VTT + EG + + ++K L + D + K E
Sbjct: 313 VFVRTWYPVTVPKYYNPVTTLLLPTEQKTGWEGMKTVGQLRKDQGLNVPVKQDSIYKPVE 372
Query: 326 GTSNQLVPVEDPKQLVNVVLHMVTDLP-TSKPGIALKQNNPASPSHNLSIIPPKKERIVS 384
+ + P+ PK+L DLP SKP A K+ P+ S ++ P+++++ S
Sbjct: 373 RQTRRFNPLVIPKKLQK-------DLPFKSKPKDAKKRQRPSLESKRAVVMEPQEKKVYS 425
Query: 385 GVEKIYTIFKNMM 397
++++YT K +
Sbjct: 426 LMQQLYTANKEKL 438
>SB_33613| Best HMM Match : PAS (HMM E-Value=0.0083)
Length = 624
Score = 37.9 bits (84), Expect = 0.026
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 21 NGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKLKPRSQV-- 78
+GF++ T G + VS+NV +LG+ + ++ Q++ H D+ M+ KL S V
Sbjct: 33 DGFIVVITQDGQLFYVSENVRDFLGYSQAAVIHQSIYKFLHIDDQDMVKLKLAWPSSVSK 92
Query: 79 -LGP------NGELLIPNEPDGVYKVVEGLRREKRSFTIRLK 113
LG + + + +G + L + R+FT R+K
Sbjct: 93 ELGKCDSETRRRDSVSGKQENGKVSELTDLEKLNRTFTCRMK 134
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 36.3 bits (80), Expect = 0.078
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 500 PDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANK 559
PD +D LN N D FI P E P +IK + + +SE D ++
Sbjct: 231 PDSNDNDKLNYIINNTKEDTFISPRNPPENTSKAFPEEIKRN-IDESEMDYDKGINLKQD 289
Query: 560 NSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAEND 600
++ N K ++ E +S KK+ + N++ ++D
Sbjct: 290 EASTNCSEVATKSKKRKKEVEDENSSVKKKLKSENLMTQDD 330
>SB_744| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 35.9 bits (79), Expect = 0.10
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 22 GFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLLEKL 72
GF I T G + +S+N YLG+ + ++ Q+ + HP D + E L
Sbjct: 4 GFFIVLTEGGNVFYISENSSSYLGYSQAHMMHQDFLTYVHPDDVESFKECL 54
>SB_38034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 732
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 38 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 97
Query: 539 KYHLVIDSEQ 548
K V +EQ
Sbjct: 98 KPFRVSLTEQ 107
>SB_23349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 909
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 KYHLVIDSEQ 548
K V +EQ
Sbjct: 127 KPFRVSLTEQ 136
>SB_4811| Best HMM Match : zf-C3HC4 (HMM E-Value=0.013)
Length = 538
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 KYHLVIDSEQ 548
K V +EQ
Sbjct: 127 KPFRVSLTEQ 136
>SB_4531| Best HMM Match : zf-C3HC4 (HMM E-Value=0.098)
Length = 533
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 271 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 330
Query: 539 KYHLVIDSEQ 548
K V +EQ
Sbjct: 331 KPFRVSLTEQ 340
>SB_36873| Best HMM Match : HTH_10 (HMM E-Value=3.4)
Length = 182
Score = 35.1 bits (77), Expect = 0.18
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 KYHLVIDSEQ 548
K V +EQ
Sbjct: 127 KPFRVSLTEQ 136
>SB_47595| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 230 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 289
Query: 539 K 539
K
Sbjct: 290 K 290
>SB_14931| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 350 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 409
Query: 539 K 539
K
Sbjct: 410 K 410
>SB_6309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 K 539
K
Sbjct: 127 K 127
>SB_57545| Best HMM Match : zf-C3HC4 (HMM E-Value=0.023)
Length = 601
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 K 539
K
Sbjct: 127 K 127
>SB_31232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 K 539
K
Sbjct: 127 K 127
>SB_29919| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 133
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 K 539
K
Sbjct: 127 K 127
>SB_6944| Best HMM Match : IF4E (HMM E-Value=9.6)
Length = 389
Score = 33.9 bits (74), Expect = 0.42
Identities = 15/61 (24%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 126
Query: 539 K 539
K
Sbjct: 127 K 127
>SB_54740| Best HMM Match : DUF1623 (HMM E-Value=9.3)
Length = 379
Score = 33.1 bits (72), Expect = 0.73
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 234 YQKKLIAQEVNADASFLLVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNKP 293
Query: 539 K 539
K
Sbjct: 294 K 294
>SB_20201| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 33.1 bits (72), Expect = 0.73
Identities = 14/59 (23%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQ 537
+ + + ++ N + + P+ +H +LN+QE+ +T+ DF+F ++ E G P +
Sbjct: 67 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVTIYDFLFKKVYKETFGSDLPNK 125
>SB_13530| Best HMM Match : RCSD (HMM E-Value=3.1)
Length = 215
Score = 31.9 bits (69), Expect = 1.7
Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 6/102 (5%)
Query: 83 GELLIPNEPDGVYKVVEGL--RREKRSFTIRLKKQGPRSEPTQYVMCHIEGSFRKADGAN 140
G L+P++ DG+ K EG +R++ T++L K R + T+Y E ++ D N
Sbjct: 103 GAKLLPDKEDGLDKDEEGKNPKRKESVITLKLSKALKRRKGTEYKAVACEDPEKEDDTTN 162
Query: 141 H---TLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVET 179
TL R V + E SG + G ++ VET
Sbjct: 163 EELDTLERDNFVENEENNEDDEEEVSGEN-GGDGNIKSQVET 203
>SB_21974| Best HMM Match : Ail_Lom (HMM E-Value=4.4)
Length = 463
Score = 31.5 bits (68), Expect = 2.2
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ + + DF+F ++ E G P +
Sbjct: 202 YQKKLIAQEVNADASFLSVIPEQGPFHVFLNLQEDVVKIYDFLFKKVYKETFGSDLPNKP 261
Query: 539 K 539
K
Sbjct: 262 K 262
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 31.5 bits (68), Expect = 2.2
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN +M ++
Sbjct: 1772 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMESVASSIQLNITSNTMMAVND 1831
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 1832 TLKTTSTSAVFPTTITPSPNITSYPSL 1858
Score = 30.7 bits (66), Expect = 3.9
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 365 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMESVASSIQLNITSNTTMAVND 424
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 425 TLTTTSTSAVFPTTITPSPNITSYPSL 451
Score = 30.7 bits (66), Expect = 3.9
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 968 NTTVIATPNTTRLVTSMISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 1027
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 1028 TLRTASTSVVFPTTITPSPNITSYPSL 1054
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 164 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 223
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 224 TLRTTSTSAVFPTTITPSPNITSYPSL 250
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSRIQEID-ESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R+ S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 1169 NTTVIATPNTTRLATSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 1228
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 1229 TLRTTSTSAVFPTTITPSPNITSYPLL 1255
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 1370 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 1429
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 1430 TLRTTSTSAVFPTTITPSPNITSYPSL 1456
Score = 29.9 bits (64), Expect = 6.8
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSRIQEID-ESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R+ S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 767 NTTVIATPNTTRLATSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 826
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 827 TLRTTSTSAVFPTTITPSPNITSYPSL 853
>SB_41994| Best HMM Match : F-box (HMM E-Value=1.4e-06)
Length = 1020
Score = 31.5 bits (68), Expect = 2.2
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 528 EPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSN 587
EP S + + + D E + ++N + + + + RPN S+
Sbjct: 452 EPNESDSQRKTSEEHAQEEDNDNEEGEEDPDENLSQTKQGEGRPLDQPRPNVGRSFGQSD 511
Query: 588 KKISNPNIVAEN 599
KKI PN A+N
Sbjct: 512 KKIKRPNAAADN 523
>SB_49328| Best HMM Match : DUF1091 (HMM E-Value=1.6)
Length = 555
Score = 31.1 bits (67), Expect = 2.9
Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 480 FSEAVAVEQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI 538
+ + + ++ N + + P+ +H +LN+QE+ + + DF+F ++ E G P +
Sbjct: 294 YQKKLIAQKVNADASFLSVIPEQGPFHVFLNLQEDVVKIYDFLFKKVYKETFGSDLPNKP 353
Query: 539 K 539
K
Sbjct: 354 K 354
>SB_13356| Best HMM Match : BACK (HMM E-Value=5.1e-16)
Length = 1155
Score = 30.7 bits (66), Expect = 3.9
Identities = 12/38 (31%), Positives = 23/38 (60%)
Query: 541 HLVIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPN 578
HL+I+ EQD+++A + + + L DL K + +P+
Sbjct: 164 HLIIEEEQDVDQAIEFCKEQNDEELWEDLIKYSLDKPS 201
>SB_54964| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 138
Score = 30.3 bits (65), Expect = 5.1
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 487 EQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIK 539
++ N + + P+ +H +LN+QE+ + + DF+F ++ E G P + K
Sbjct: 5 QEVNADASFLSVIPEQGPFHVFLNLQEDVVKIYDFLFKKVYKETFGSDLPNKPK 58
>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
Length = 848
Score = 30.3 bits (65), Expect = 5.1
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 487 EQYNPEFGLTATSPDV-TYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIK 539
++ N + + P+ +H +LN+QE+ + + DF+F ++ E G P + K
Sbjct: 5 QEVNADASFLSVIPEQGPFHVFLNLQEDVVKIYDFLFKKVYKETFGSDLPNKPK 58
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 164 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 223
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 224 TLRTTSTSAVFPTTITPSPNITSYPSL 250
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 365 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 424
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 425 TLRTTSTSAVFPTTITPSPNITSYPSL 451
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 30.3 bits (65), Expect = 5.1
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 551 NEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS 603
N + N N++ N ++ N I + N + + ++N I+N N N+ SS
Sbjct: 1744 NNSINNCNNNNSINNRNNNNSINNRNNTNNNSINNNNSSINNNNSSINNNNSS 1796
Score = 29.9 bits (64), Expect = 6.8
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 558 NKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS 603
N NS N S +N NN S + ++N I+N N N+ SS
Sbjct: 1772 NNNSINNNNSSINNNNSSINNNNSSIINNNSSINNNNSSINNNNSS 1817
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 476 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 535
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 536 TLRTTSTSAVFPTTITPSPNITSYPSL 562
Score = 30.3 bits (65), Expect = 5.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM 479
N + AT N++R + S+T + D+ +TS+ + + QLN+TSN M
Sbjct: 677 NTTVIATPNTTRLVTSTISSSTVNVSDISTTSSIESTIMASVASSIQLNITSNTTM 732
Score = 29.9 bits (64), Expect = 6.8
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 74 NTTVIATPNTTRLVTSTISSSTVNVSVISTTSSIESTIMASVASSIQLNITSNTTMAVND 133
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 134 TLRTTSTSAVFPTTITPSPNITSYPSL 160
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 30.3 bits (65), Expect = 5.1
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 9/83 (10%)
Query: 546 SEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKIS-NPNIVAENDFSSE 604
+EQDL QA+KN LE + K + ++ +NK+I N +A+ D S+
Sbjct: 1332 AEQDL-----QASKNQQTRLEQQKANLEQKIKHLEDDLEQANKRIDVLENALADQDSESK 1386
Query: 605 FACLESFLDDVTLNTQIETAIKS 627
+ FLD ++E+++K+
Sbjct: 1387 YG---EFLDQENRIAELESSLKA 1406
>SB_56523| Best HMM Match : Pox_A_type_inc (HMM E-Value=0)
Length = 2858
Score = 29.9 bits (64), Expect = 6.8
Identities = 27/117 (23%), Positives = 49/117 (41%), Gaps = 4/117 (3%)
Query: 545 DSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSE 604
D E + + Q + KN LESD K+ + + ++V + NK+I + + +
Sbjct: 1212 DKENRMKQELQ-SYKNRYEKLESDYRKLQQENVDLRAKVNALNKRIRDLEAAKDRAEKEK 1270
Query: 605 FACLESFLDDVTLNTQIETAIKSLEQTIDPSFPELLISSEVQEILGKIEEEQKNQQQ 661
A E + +E ++++ D +L ++ E L K EE N QQ
Sbjct: 1271 QAIKEELVQANNDLADLEIEHDTVQKDYDSLKKQL---ADANERLAKAREENMNLQQ 1324
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 29.9 bits (64), Expect = 6.8
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 112 LKKQGPRSEPTQYVMCHIEGSFRKADGA 139
L++ + EP++YV+C + G F+ +DG+
Sbjct: 354 LERYSLKMEPSEYVLCDVIGYFKGSDGS 381
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 29.9 bits (64), Expect = 6.8
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS+ + + QLN+TSN M ++
Sbjct: 147 NTTVIATPNTTRMVTSSISSSTVNVSAISTTSSIESTIMASVASSIQLNITSNTTMAVND 206
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 207 TLRTTSTSAVFPTTITPSPNITSYPSL 233
Score = 29.5 bits (63), Expect = 9.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 425 NQPLFATENSSR-IQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLM-FSE 482
N + AT N++R + S+T + + +TS + + QLN+TSN M ++
Sbjct: 348 NTTVIATPNTTRLVTSTISSSTVNVSAISTTSLIESTIMASVASSIQLNITSNTTMAVND 407
Query: 483 AVAVEQYNPEFGLTAT-SPDVTYHDYL 508
+ + F T T SP++T + L
Sbjct: 408 TLRTTSTSAVFPTTITPSPNITSYPSL 434
>SB_54018| Best HMM Match : OS-D (HMM E-Value=5.2)
Length = 671
Score = 29.5 bits (63), Expect = 9.0
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 270 RTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLKYDEGTSN 329
+TRG + +E+ K + T CT + E EGK IK++ + L KY+ G +
Sbjct: 271 KTRGKI-LERFDKKLATTGCTKEDLFEMEGKLRIKLV--AVDALGNVLWDSGKYERGCTQ 327
Query: 330 QLVPVEDPKQLVNVVLHMVTDLPTSKPGIA 359
+P + H +LPT P IA
Sbjct: 328 IRIPCHNN--------HAWAELPTEPPAIA 349
>SB_11727| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1261
Score = 29.5 bits (63), Expect = 9.0
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 540 YHLVIDSEQDLNEAFQQANK--NSAANLESDL--NKIGMKRPNNFSEVASSNKKISNPNI 595
Y+L D Q L Q+ + N+ +L S L K+G+ + FS++ K SNP +
Sbjct: 569 YNLAADFTQSLETQIQRLVQWNNARCHLTSCLLTQKMGLFHHSLFSDIQDKKGKNSNPYV 628
Query: 596 VAEND 600
V+ +D
Sbjct: 629 VSADD 633
>SB_48412| Best HMM Match : ResIII (HMM E-Value=0.19)
Length = 1390
Score = 29.5 bits (63), Expect = 9.0
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 270 RTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLKYDEGTSN 329
+TRG + +E+ K + T CT + E EGK IK++ + L KY+ G +
Sbjct: 394 KTRGKI-LERFDKKLATTGCTKEDLFEMEGKLRIKLV--AVDALGNVLWDSGKYERGCTQ 450
Query: 330 QLVPVEDPKQLVNVVLHMVTDLPTSKPGIA 359
+P + H +LPT P IA
Sbjct: 451 IRIPCHNN--------HAWAELPTEPPAIA 472
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,601,294
Number of Sequences: 59808
Number of extensions: 923287
Number of successful extensions: 2179
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2113
Number of HSP's gapped (non-prelim): 77
length of query: 661
length of database: 16,821,457
effective HSP length: 87
effective length of query: 574
effective length of database: 11,618,161
effective search space: 6668824414
effective search space used: 6668824414
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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