GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
         (661 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...   246   2e-66
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    30   0.17 
DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasm...    26   3.7  

>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score =  246 bits (601), Expect = 2e-66
 Identities = 166/439 (37%), Positives = 243/439 (55%), Gaps = 69/439 (15%)

Query: 10  PEFTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQ--------------- 54
           PE  D++ ++ NGFL+T T RG IV+VS +V Q+LG  + DL GQ               
Sbjct: 289 PEAQDSLFRMLNGFLLTVTCRGQIVLVSPSVEQFLGHCQTDLYGQNLFTLTHPDDHALLK 348

Query: 55  ------NLVNL-------THPRDRQMLLEKLKPRSQVLGPNGELLIPNEPDGVYKVVEGL 101
                 NLVN+       T       LL   +  S   G +G        D   ++   L
Sbjct: 349 QQLIPSNLVNMFDNGSPSTSCGAPPALLGSGEGGSGTHGTDGGGEFQRSYDDEEEIDRKL 408

Query: 102 RREKRSFTIRLKKQGPRSEPTQYVMCHIEGSFRKADGANHTLSRCC-------------- 147
           R++ R FTIR+ + GPRSE T Y +  I+G FR+AD A    S                 
Sbjct: 409 RQDHRRFTIRMARAGPRSEATTYELVTIDGCFRRADSAPRGSSSSSSSATKAGAAGAGGT 468

Query: 148 ----QVVRRSRTRGEA---PECSGNDIVFIGVVRPSVETFHSESRMESFCMEYRTRHSVD 200
               Q++RR R R +A      +GNDIV I + R        +  +E+   EY+TRH +D
Sbjct: 469 AGSMQMIRRVRGRDDAIPLHSINGNDIVLIALARVMKVPSICDRLIEACKYEYKTRHLID 528

Query: 201 GQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLI 260
           G+IVQC+QRIS+V GY+T EV G++   FMHRDDVRWV  ALR MYD ++  GESCYRL+
Sbjct: 529 GRIVQCDQRISIVAGYLTDEVSGLSPFTFMHRDDVRWVIVALRQMYDYNQ-NGESCYRLM 587

Query: 261 TKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKL 320
           ++ G FIY++TRG+L+++ D+K V +FVC NT++ EEEG+RL++ MK++ +++    DK+
Sbjct: 588 SRTGDFIYLKTRGYLEVDSDTKVVQSFVCINTLVSEEEGQRLVREMKRKFSVIV---DKV 644

Query: 321 LKYDEGTSNQLVPVEDPKQLVNVVLHMVTDL-PTSKPGIALKQNNPASPSHN-------- 371
              DE  S + V VE+PKQ+   V++++T+L P S+    L    PASP+ +        
Sbjct: 645 ELPDE--SGEPV-VENPKQIEEAVMNLITNLQPDSED--KLLNTMPASPASSIKSGYGEG 699

Query: 372 --LSIIPPKKERIVSGVEK 388
             L+I+ P+K  + S + K
Sbjct: 700 APLAIVAPEKNSVKSAIVK 718


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 556 QANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDV 615
           +A++     L  +L ++ +KR    +EVA  +KK    N+  E D   E+  L+   D  
Sbjct: 337 EAHQADIKKLVDELQEVEVKRAAFENEVAGESKK-RGSNVHLERDLVQEYDRLKQKADAT 395

Query: 616 TLNTQIETAIKSLEQTIDPS--FPELLISSEVQEILGKIEEEQKNQ 659
           +    I     + EQ  D      E+   ++++E   KIE E KN+
Sbjct: 396 SSKYLIHLDSVNREQKSDQDRLDSEINKKAQIEENYKKIESE-KNE 440


>DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasmic
           carbonic anhydrase protein.
          Length = 276

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 47  PELDLLGQNLVNLTHPRDRQMLLEKLKP 74
           PELD++ + L  +TH  DR  L + L P
Sbjct: 156 PELDIIARLLPFITHKGDRVTLNKPLDP 183


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.316    0.133    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,720
Number of Sequences: 2123
Number of extensions: 28500
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 7
length of query: 661
length of database: 516,269
effective HSP length: 68
effective length of query: 593
effective length of database: 371,905
effective search space: 220539665
effective search space used: 220539665
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)