Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
(661 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical pr... 46 9e-05
Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical pr... 46 9e-05
AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocar... 46 9e-05
Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical pr... 40 0.007
AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative tran... 40 0.007
AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS fact... 40 0.007
Z81110-1|CAB03258.2| 322|Caenorhabditis elegans Hypothetical pr... 38 0.030
AF370362-1|AAK52515.1| 322|Caenorhabditis elegans putative tran... 38 0.030
Z92833-9|CAD54141.2| 665|Caenorhabditis elegans Hypothetical pr... 36 0.069
Z92833-8|CAI70417.1| 719|Caenorhabditis elegans Hypothetical pr... 36 0.069
Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical pr... 36 0.069
Z92833-6|CAB07380.1| 823|Caenorhabditis elegans Hypothetical pr... 36 0.069
AL023842-11|CAD54168.2| 665|Caenorhabditis elegans Hypothetical... 36 0.069
AL023842-10|CAI70400.1| 719|Caenorhabditis elegans Hypothetical... 36 0.069
AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical ... 36 0.069
AL023842-8|CAA19520.1| 823|Caenorhabditis elegans Hypothetical ... 36 0.069
AF364604-1|AAK62778.1| 719|Caenorhabditis elegans hypoxia-induc... 36 0.069
Z81038-8|CAB02764.1| 453|Caenorhabditis elegans Hypothetical pr... 33 0.64
AF039569-1|AAB99999.1| 451|Caenorhabditis elegans aryl hydrocar... 33 0.64
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 32 1.1
AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical ... 32 1.5
AF357877-1|AAK27715.1| 835|Caenorhabditis elegans receptor-medi... 31 2.6
AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor medi... 31 2.6
U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical pr... 31 3.4
AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain, ... 30 6.0
AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain, ... 30 6.0
U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical pr... 29 7.9
AF047656-7|AAC05108.1| 419|Caenorhabditis elegans Hypothetical ... 29 7.9
AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical ... 29 7.9
AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical ... 29 7.9
AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical ... 29 7.9
>Z81048-9|CAI79126.1| 560|Caenorhabditis elegans Hypothetical
protein C41G7.5b protein.
Length = 560
Score = 46.0 bits (104), Expect = 9e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 6 PDFNPE---FTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHP 62
P +PE F + LK GF++ G I S+NV YLGF + D+L Q + +L H
Sbjct: 78 PMLDPEESNFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHS 137
Query: 63 RDRQMLLEKL 72
DR + ++L
Sbjct: 138 EDRDDIRQQL 147
Score = 33.1 bits (72), Expect = 0.64
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 163 SGNDIVFIGVVRPSVETFHSESRMESFCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVK 222
SG + I V P V S S + S M +T+H +DG +V +Q++ + ++
Sbjct: 217 SGPVLGMICVCTPFVPP--STSDLASEDMILKTKHQLDGALVSMDQKVYEMLEIDETDLP 274
Query: 223 GVNAMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSK 282
+ N +H +D +A A ++ ++ G YRL++ + Y K+SK
Sbjct: 275 -MPLYNLVHVEDAVCMAEAHKEAI-KNGSSGLLVYRLVSTKTRRTYFVQSSCRMFYKNSK 332
Query: 283 AVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLK 322
+ T+ ++ E EG L++ A L +D L+
Sbjct: 333 P-ESIGLTHRLLNEVEGTMLLEKRSTLKAKLLSFDDSFLQ 371
>Z81048-8|CAB51463.1| 602|Caenorhabditis elegans Hypothetical
protein C41G7.5a protein.
Length = 602
Score = 46.0 bits (104), Expect = 9e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 6 PDFNPE---FTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHP 62
P +PE F + LK GF++ G I S+NV YLGF + D+L Q + +L H
Sbjct: 120 PMLDPEESNFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHS 179
Query: 63 RDRQMLLEKL 72
DR + ++L
Sbjct: 180 EDRDDIRQQL 189
Score = 33.1 bits (72), Expect = 0.64
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 163 SGNDIVFIGVVRPSVETFHSESRMESFCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVK 222
SG + I V P V S S + S M +T+H +DG +V +Q++ + ++
Sbjct: 259 SGPVLGMICVCTPFVPP--STSDLASEDMILKTKHQLDGALVSMDQKVYEMLEIDETDLP 316
Query: 223 GVNAMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSK 282
+ N +H +D +A A ++ ++ G YRL++ + Y K+SK
Sbjct: 317 -MPLYNLVHVEDAVCMAEAHKEAI-KNGSSGLLVYRLVSTKTRRTYFVQSSCRMFYKNSK 374
Query: 283 AVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLK 322
+ T+ ++ E EG L++ A L +D L+
Sbjct: 375 P-ESIGLTHRLLNEVEGTMLLEKRSTLKAKLLSFDDSFLQ 413
>AF039570-1|AAC00000.1| 602|Caenorhabditis elegans aryl hydrocarbon
receptor orthologAHR-1 protein.
Length = 602
Score = 46.0 bits (104), Expect = 9e-05
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 6 PDFNPE---FTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHP 62
P +PE F + LK GF++ G I S+NV YLGF + D+L Q + +L H
Sbjct: 120 PMLDPEESNFEEISLKSLGGFILVLNDNGEIYYASENVENYLGFHQSDVLHQPVYDLIHS 179
Query: 63 RDRQMLLEKL 72
DR + ++L
Sbjct: 180 EDRDDIRQQL 189
Score = 33.1 bits (72), Expect = 0.64
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 5/160 (3%)
Query: 163 SGNDIVFIGVVRPSVETFHSESRMESFCMEYRTRHSVDGQIVQCEQRISLVTGYMTHEVK 222
SG + I V P V S S + S M +T+H +DG +V +Q++ + ++
Sbjct: 259 SGPVLGMICVCTPFVPP--STSDLASEDMILKTKHQLDGALVSMDQKVYEMLEIDETDLP 316
Query: 223 GVNAMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSK 282
+ N +H +D +A A ++ ++ G YRL++ + Y K+SK
Sbjct: 317 -MPLYNLVHVEDAVCMAEAHKEAI-KNGSSGLLVYRLVSTKTRRTYFVQSSCRMFYKNSK 374
Query: 283 AVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTKTNDKLLK 322
+ T+ ++ E EG L++ A L +D L+
Sbjct: 375 P-ESIGLTHRLLNEVEGTMLLEKRSTLKAKLLSFDDSFLQ 413
>Z75527-2|CAA99775.2| 636|Caenorhabditis elegans Hypothetical
protein C15C8.2 protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.007
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 33/258 (12%)
Query: 16 VLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLL--GQNLVNLTHPRDRQMLLEKLK 73
+ K GF++ T G I+ VS N +YLG +++ G ++ +L RD + +L
Sbjct: 157 ICKALRGFMLMVTRSGKILHVSDNASEYLGHSVEEIMCQGDSIYDLVDGRDHGAVQAELA 216
Query: 74 PRSQVLGPNGELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCHIEGSF 133
GP G P E+R F RL QY H F
Sbjct: 217 S-----GPPGAATFP---------------EERVFICRLNLARTAKRQLQY---H---KF 250
Query: 134 RKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMESFCMEY 193
G + + ++ + P+C + VF +P + ++E +
Sbjct: 251 VLFQGR---YIQPAEFYQQLNAQNSQPDC--DQPVFSAYCQPLINPENAEGMSTGNTHVF 305
Query: 194 RTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLFG 253
T+H +D + + + S G+ ++KG++ +H + V +A R + +
Sbjct: 306 STQHYLDMKFKEADTMASQHLGFSKEQLKGMSWYGMIHPNHVPEIAHKHRLLCQEKEGSV 365
Query: 254 ESCYRLITKNGQFIYMRT 271
+ RL NG++I++ T
Sbjct: 366 LALIRLQAANGEWIWLHT 383
>AF370361-1|AAK52514.1| 636|Caenorhabditis elegans putative
transcription factor C15C8.2protein.
Length = 636
Score = 39.5 bits (88), Expect = 0.007
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 33/258 (12%)
Query: 16 VLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLL--GQNLVNLTHPRDRQMLLEKLK 73
+ K GF++ T G I+ VS N +YLG +++ G ++ +L RD + +L
Sbjct: 157 ICKALRGFMLMVTRSGKILHVSDNASEYLGHSVEEIMCQGDSIYDLVDGRDHGAVQAELA 216
Query: 74 PRSQVLGPNGELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCHIEGSF 133
GP G P E+R F RL QY H F
Sbjct: 217 S-----GPPGAATFP---------------EERVFICRLNLARTAKRQLQY---H---KF 250
Query: 134 RKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMESFCMEY 193
G + + ++ + P+C + VF +P + ++E +
Sbjct: 251 VLFQGR---YIQPAEFYQQLNAQNSQPDC--DQPVFSAYCQPLINPENAEGMSTGNTHVF 305
Query: 194 RTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLFG 253
T+H +D + + + S G+ ++KG++ +H + V +A R + +
Sbjct: 306 STQHYLDMKFKEADTMASQHLGFSKEQLKGMSWYGMIHPNHVPEIAHKHRLLCQEKEGSV 365
Query: 254 ESCYRLITKNGQFIYMRT 271
+ RL NG++I++ T
Sbjct: 366 LALIRLQAANGEWIWLHT 383
>AB096001-1|BAE53417.1| 676|Caenorhabditis elegans bHLH-PAS factor
protein.
Length = 676
Score = 39.5 bits (88), Expect = 0.007
Identities = 54/258 (20%), Positives = 100/258 (38%), Gaps = 33/258 (12%)
Query: 16 VLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLL--GQNLVNLTHPRDRQMLLEKLK 73
+ K GF++ T G I+ VS N +YLG +++ G ++ +L RD + +L
Sbjct: 157 ICKALRGFMLMVTRSGKILHVSDNASEYLGHSVEEIMCQGDSIYDLVDGRDHGAVQAELA 216
Query: 74 PRSQVLGPNGELLIPNEPDGVYKVVEGLRREKRSFTIRLKKQGPRSEPTQYVMCHIEGSF 133
GP G P E+R F RL QY H F
Sbjct: 217 S-----GPPGAATFP---------------EERVFICRLNLARTAKRQLQY---H---KF 250
Query: 134 RKADGANHTLSRCCQVVRRSRTRGEAPECSGNDIVFIGVVRPSVETFHSESRMESFCMEY 193
G + + ++ + P+C + VF +P + ++E +
Sbjct: 251 VLFQGR---YIQPAEFYQQLNAQNSQPDC--DQPVFSAYCQPLINPENAEGMSTGNTHVF 305
Query: 194 RTRHSVDGQIVQCEQRISLVTGYMTHEVKGVNAMNFMHRDDVRWVATALRDMYDQHRLFG 253
T+H +D + + + S G+ ++KG++ +H + V +A R + +
Sbjct: 306 STQHYLDMKFKEADTMASQHLGFSKEQLKGMSWYGMIHPNHVPEIAHKHRLLCQEKEGSV 365
Query: 254 ESCYRLITKNGQFIYMRT 271
+ RL NG++I++ T
Sbjct: 366 LALIRLQAANGEWIWLHT 383
>Z81110-1|CAB03258.2| 322|Caenorhabditis elegans Hypothetical
protein T01D3.2 protein.
Length = 322
Score = 37.5 bits (83), Expect = 0.030
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 12 FTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
+T+ L L +GF + RG ++ +S+ + YLG ++++ G +V+ H +D
Sbjct: 85 WTNNHLDLLDGFFVILDRRGDVLYISETISIYLGLSQVEMTGNAMVDYIHEQD 137
>AF370362-1|AAK52515.1| 322|Caenorhabditis elegans putative
transcription factor T01D3.2protein.
Length = 322
Score = 37.5 bits (83), Expect = 0.030
Identities = 15/53 (28%), Positives = 31/53 (58%)
Query: 12 FTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
+T+ L L +GF + RG ++ +S+ + YLG ++++ G +V+ H +D
Sbjct: 85 WTNNHLDLLDGFFVILDRRGDVLYISETISIYLGLSQVEMTGNAMVDYIHEQD 137
>Z92833-9|CAD54141.2| 665|Caenorhabditis elegans Hypothetical
protein F38A6.3d protein.
Length = 665
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 88 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 138
>Z92833-8|CAI70417.1| 719|Caenorhabditis elegans Hypothetical
protein F38A6.3e protein.
Length = 719
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 88 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 138
>Z92833-7|CAB07381.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 192 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 242
>Z92833-6|CAB07380.1| 823|Caenorhabditis elegans Hypothetical
protein F38A6.3a protein.
Length = 823
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 192 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 242
>AL023842-11|CAD54168.2| 665|Caenorhabditis elegans Hypothetical
protein F38A6.3d protein.
Length = 665
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 88 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 138
>AL023842-10|CAI70400.1| 719|Caenorhabditis elegans Hypothetical
protein F38A6.3e protein.
Length = 719
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 88 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 138
>AL023842-9|CAA19521.1| 825|Caenorhabditis elegans Hypothetical
protein F38A6.3b protein.
Length = 825
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 192 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 242
>AL023842-8|CAA19520.1| 823|Caenorhabditis elegans Hypothetical
protein F38A6.3a protein.
Length = 823
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 192 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 242
>AF364604-1|AAK62778.1| 719|Caenorhabditis elegans hypoxia-induced
factor 1 protein.
Length = 719
Score = 36.3 bits (80), Expect = 0.069
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 14 DAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRD 64
D + + +GF++ I+ V+++V YLG + DL G+ L + HP D
Sbjct: 88 DTIAECLDGFVMIVDSDSSILYVTESVAMYLGLTQTDLTGRALRDFLHPSD 138
>Z81038-8|CAB02764.1| 453|Caenorhabditis elegans Hypothetical
protein C25A1.11 protein.
Length = 453
Score = 33.1 bits (72), Expect = 0.64
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 11 EFTDAVLKLFNGFL-ITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLL 69
E +L+ NGFL + G ++ V+ ++ L + D L +NL L HP D+ +
Sbjct: 117 ELKHLILEAANGFLFVVCCQTGKVLYVADSITPVLNLKQEDWLQRNLNELIHPDDQDKIR 176
Query: 70 EKL 72
++L
Sbjct: 177 DQL 179
>AF039569-1|AAB99999.1| 451|Caenorhabditis elegans aryl hydrocarbon
receptor nucleartranslocator ortholog AHA-1 protein.
Length = 451
Score = 33.1 bits (72), Expect = 0.64
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 11 EFTDAVLKLFNGFL-ITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTHPRDRQMLL 69
E +L+ NGFL + G ++ V+ ++ L + D L +NL L HP D+ +
Sbjct: 117 ELKHLILEAANGFLFVVCCQTGKVLYVADSITPVLNLKQEDWLQRNLNELIHPDDQDKIR 176
Query: 70 EKL 72
++L
Sbjct: 177 DQL 179
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 32.3 bits (70), Expect = 1.1
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 7/111 (6%)
Query: 556 QANKNSAANLESDLNKIG----MKRPNNFSEVASSNKKIS-NPNIVAENDFSSEFACLES 610
Q+++NS++N D+N+ G MK + FS + S + IS + N ++N F ++
Sbjct: 550 QSSQNSSSNFFGDMNQTGTGFFMKDNSCFSHLGSGCRLISASSNDDSQNTFGGTGRAFQA 609
Query: 611 FLDDVTLNTQIETAIKSLEQTIDPSFPELLISSEVQEILGKIEEEQKNQQQ 661
+ N+Q++ + +TI E + S+ Q+ + + NQQQ
Sbjct: 610 AVPPPPENSQLQFQNFGMTETIPQQSNEHV--SQQQQQIAQSRPMNLNQQQ 658
>AF016442-8|AAB65916.1| 881|Caenorhabditis elegans Hypothetical
protein K12B6.1 protein.
Length = 881
Score = 31.9 bits (69), Expect = 1.5
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 543 VIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFS 602
++D Q L +Q + S +N+ G R + F ++N+++ + N++
Sbjct: 504 LVDCIQHLTSTMRQLGMEVSNPTVSLINR-GYLR-SIFENAKAANRQLIMFITKSMNNYH 561
Query: 603 SEFACLESFLDDVTLNTQIETAIKSLEQ 630
+E CLE D +T + + ETA+K +Q
Sbjct: 562 TEIKCLEQEFDLLTQDIRFETAVKLAQQ 589
>AF357877-1|AAK27715.1| 835|Caenorhabditis elegans
receptor-mediated endocytosis 1isoform II protein.
Length = 835
Score = 31.1 bits (67), Expect = 2.6
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 18/194 (9%)
Query: 450 DMPSTSTALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPEFGLT--ATSPDVTYHDY 507
D+ T + N FE+ +S N E V++E N E A +P V +
Sbjct: 14 DIDKTLVIFRKKSTNPFEKTSERFSSTNPFGGEIVSMESVNSEEHKINEAPAPPVIVINS 73
Query: 508 LNVQENEITLDDFI------FPELIDEP-----QGIQSPTQIKYHLVIDSEQDLNEAFQQ 556
+E E T D I + DE +G+ S +I + S ++LN +
Sbjct: 74 STKEEQEATQTDRIEGQMKKIDSVFDEQNVASLEGVNSKNEISGSVSSSSFEELNAETED 133
Query: 557 ANKNSAANLESDLNKI--GMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDD 614
++ S + DL ++ K P V S + S I E + S E+ ++
Sbjct: 134 LSERSEVEKDEDLGRVVEEHKEPAQV-PVESETPETSKKEIHQEEEISELEKVPETVEEE 192
Query: 615 V-TLNTQIE-TAIK 626
+ +NT +E T +K
Sbjct: 193 IEVVNTSVEITEVK 206
>AC006695-6|AAF39979.1| 835|Caenorhabditis elegans Receptor
mediated endocytosis protein1, isoform b protein.
Length = 835
Score = 31.1 bits (67), Expect = 2.6
Identities = 45/194 (23%), Positives = 76/194 (39%), Gaps = 18/194 (9%)
Query: 450 DMPSTSTALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPEFGLT--ATSPDVTYHDY 507
D+ T + N FE+ +S N E V++E N E A +P V +
Sbjct: 14 DIDKTLVIFRKKSTNPFEKTSERFSSTNPFGGEIVSMESVNSEEHKINEAPAPPVIVINS 73
Query: 508 LNVQENEITLDDFI------FPELIDEP-----QGIQSPTQIKYHLVIDSEQDLNEAFQQ 556
+E E T D I + DE +G+ S +I + S ++LN +
Sbjct: 74 STKEEQEATQTDRIEGQMKKIDSVFDEQNVASLEGVNSKNEISGSVSSSSFEELNAETED 133
Query: 557 ANKNSAANLESDLNKI--GMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDD 614
++ S + DL ++ K P V S + S I E + S E+ ++
Sbjct: 134 LSERSEVEKDEDLGRVVEEHKEPAQV-PVESETPETSKKEIHQEEEISELEKVPETVEEE 192
Query: 615 V-TLNTQIE-TAIK 626
+ +NT +E T +K
Sbjct: 193 IEVVNTSVEITEVK 206
>U41263-4|AAC24426.4| 779|Caenorhabditis elegans Hypothetical
protein T19D12.6 protein.
Length = 779
Score = 30.7 bits (66), Expect = 3.4
Identities = 37/109 (33%), Positives = 51/109 (46%), Gaps = 21/109 (19%)
Query: 256 CYRLITKNGQFIYMRTRGHLDIEKDSKAVTTFVCTNTVIGEEEGKRLIKMMKKRIALLTK 315
C RL+ NG+ + + T E +KA+ + V N GEEE K L K KKR +
Sbjct: 258 CVRLLVVNGE-VLLNTN-----ETINKALDSSV--NYYCGEEEPK-LEK--KKRKIIKVM 306
Query: 316 TNDKLLKYDEGTSNQLVPVED--------PKQLVNVVLHMVTDLPTSKP 356
T DK + D S+ ++ +E PK L +HM T PTS P
Sbjct: 307 TGDK--ENDNEESDDIIQIEMFDLTQRGIPKILETPGMHMSTQSPTSLP 353
>AF125462-4|AAD12859.1| 1219|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform a protein.
Length = 1219
Score = 29.9 bits (64), Expect = 6.0
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 169 FIGVVRPSVETFHSESRMESFCMEY---RTRHSVDGQIVQCEQRISLVTGYMTHEVKGVN 225
F+GV+ + F++++ E FC+ + + ++ + +I++ EQ + G +++ ++
Sbjct: 477 FVGVLDVAGFEFYAKNSFEQFCINFCNEKLQNFFNQRILREEQELYEKEGLNVRKIEFID 536
Query: 226 AMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSK 282
+ + +++ L D+ D+ F S Y+ TK R LD + SK
Sbjct: 537 NQDCIELFELK--GNGLFDLLDEEAKFPTSNYKSFTKRAH-EENRKHFRLDTPRKSK 590
>AF125462-3|AAT68888.1| 1144|Caenorhabditis elegans Heavy chain,
unconventional myosinprotein 8, isoform b protein.
Length = 1144
Score = 29.9 bits (64), Expect = 6.0
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 6/117 (5%)
Query: 169 FIGVVRPSVETFHSESRMESFCMEY---RTRHSVDGQIVQCEQRISLVTGYMTHEVKGVN 225
F+GV+ + F++++ E FC+ + + ++ + +I++ EQ + G +++ ++
Sbjct: 477 FVGVLDVAGFEFYAKNSFEQFCINFCNEKLQNFFNQRILREEQELYEKEGLNVRKIEFID 536
Query: 226 AMNFMHRDDVRWVATALRDMYDQHRLFGESCYRLITKNGQFIYMRTRGHLDIEKDSK 282
+ + +++ L D+ D+ F S Y+ TK R LD + SK
Sbjct: 537 NQDCIELFELK--GNGLFDLLDEEAKFPTSNYKSFTKRAH-EENRKHFRLDTPRKSK 590
>U61944-3|AAB03119.1| 818|Caenorhabditis elegans Hypothetical
protein T12E12.3 protein.
Length = 818
Score = 29.5 bits (63), Expect = 7.9
Identities = 41/161 (25%), Positives = 66/161 (40%), Gaps = 15/161 (9%)
Query: 419 LDINMINQPLFATENSSRIQEIDESN---TFEIFDMPSTSTALCQVEPNYFEEGQLNVTS 475
+D N+I+ L E I+E DES T E+ D+ L + P E +++
Sbjct: 463 IDRNLISYKLLDAEEEEVIEEDDESEEVATLEVMDVDDED--LDETVPLESNEAMIHMDE 520
Query: 476 N--NLMFSEAVAVEQYNPEFGLTATSPDVTYHD---YLNVQENEITLDDFIFPELIDE-- 528
N + S N E +T ++ D T + + +E+ D +F D
Sbjct: 521 NLDTSVLSNKTMDSVNNLENSITESTNDFTVFEGTAAAVLLPSEVVSQD-VFGSQSDSTV 579
Query: 529 PQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDL 569
P+ P +I LV DS+ DLN Q + A + + DL
Sbjct: 580 PESAPEPAEISSSLV-DSD-DLNSKSAQQVLDDADDEDMDL 618
>AF047656-7|AAC05108.1| 419|Caenorhabditis elegans Hypothetical
protein F17E9.8 protein.
Length = 419
Score = 29.5 bits (63), Expect = 7.9
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 452 PSTSTALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPEFGLTATSPDVTY-HDYLNV 510
PS + + PN F ++ T + +SE + Y+P ++ V+Y +D++ +
Sbjct: 3 PSDDLTMVTITPNTFILLSMDQTQETIQYSEEFLLRWYDPILHWNQSA--VSYENDWIKI 60
Query: 511 QENEITLDDFIFPELID 527
+ + D IF ID
Sbjct: 61 SASRAWIPDVIFTNGID 77
>AF000196-9|AAO61448.1| 395|Caenorhabditis elegans Hypothetical
protein B0041.2c protein.
Length = 395
Score = 29.5 bits (63), Expect = 7.9
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 566 ESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVT-LNTQIETA 624
E +L K+G RP+N+ E AS +K S + +ND + + +VT L+ +I A
Sbjct: 261 EDELKKLGENRPSNYDEGASKEEKESWMSKDQKNDHDKAVIGVVTAKIEVTQLSKKITEA 320
Query: 625 IKSLEQTIDPSFPELLISS 643
+ +E + P P+ S+
Sbjct: 321 L--IEAGLLPPQPQTSTSA 337
>AF000196-8|AAL11096.1| 624|Caenorhabditis elegans Hypothetical
protein B0041.2b protein.
Length = 624
Score = 29.5 bits (63), Expect = 7.9
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 566 ESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVT-LNTQIETA 624
E +L K+G RP+N+ E AS +K S + +ND + + +VT L+ +I A
Sbjct: 490 EDELKKLGENRPSNYDEGASKEEKESWMSKDQKNDHDKAVIGVVTAKIEVTQLSKKITEA 549
Query: 625 IKSLEQTIDPSFPELLISS 643
+ +E + P P+ S+
Sbjct: 550 L--IEAGLLPPQPQTSTSA 566
>AF000196-7|AAC24251.2| 706|Caenorhabditis elegans Hypothetical
protein B0041.2a protein.
Length = 706
Score = 29.5 bits (63), Expect = 7.9
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 566 ESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVT-LNTQIETA 624
E +L K+G RP+N+ E AS +K S + +ND + + +VT L+ +I A
Sbjct: 572 EDELKKLGENRPSNYDEGASKEEKESWMSKDQKNDHDKAVIGVVTAKIEVTQLSKKITEA 631
Query: 625 IKSLEQTIDPSFPELLISS 643
+ +E + P P+ S+
Sbjct: 632 L--IEAGLLPPQPQTSTSA 648
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,468,398
Number of Sequences: 27539
Number of extensions: 723212
Number of successful extensions: 2062
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2025
Number of HSP's gapped (non-prelim): 55
length of query: 661
length of database: 12,573,161
effective HSP length: 86
effective length of query: 575
effective length of database: 10,204,807
effective search space: 5867764025
effective search space used: 5867764025
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 63 (29.5 bits)
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