Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000657-TA|BGIBMGA000657-PA|IPR013655|PAS fold-3,
IPR000014|PAS
(661 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g31230.1 68417.m04433 protein kinase family protein contains ... 36 0.086
At5g12000.1 68418.m01403 protein kinase family protein contains ... 33 0.46
At2g36200.1 68415.m04444 kinesin motor protein-related 33 0.46
At2g24370.1 68415.m02912 protein kinase family protein contains ... 33 0.80
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 31 2.4
At1g07330.1 68414.m00781 hypothetical protein 31 2.4
At4g39780.1 68417.m05633 AP2 domain-containing transcription fac... 31 3.2
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 30 4.3
At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)... 30 5.6
At1g04600.1 68414.m00454 myosin, putative similar to myosin (GI:... 30 5.6
At5g10250.1 68418.m01190 phototropic-responsive protein, putativ... 29 7.4
At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR ... 29 9.8
At4g25160.1 68417.m03622 protein kinase family protein contains ... 29 9.8
At1g78940.1 68414.m09203 protein kinase family protein contains ... 29 9.8
>At4g31230.1 68417.m04433 protein kinase family protein contains
Pfam profiles PF00069: Protein kinase domain, PF00582:
universal stress protein family
Length = 764
Score = 35.9 bits (79), Expect = 0.086
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLN 472
+P + +LD N +++ A +R+ +NT + M ST+ C ++P Y + G L
Sbjct: 591 KPANILLDRNFVSK--LADVGLARLVPPSVANTVTQYHMTSTAGTFCYIDPEYQQTGMLG 648
Query: 473 VTSN----NLMFSEAVAVEQYNPEFGLT 496
V S+ +MF + + + P GLT
Sbjct: 649 VKSDIYSLGIMFLQLITGK---PPMGLT 673
>At5g12000.1 68418.m01403 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 703
Score = 33.5 bits (73), Expect = 0.46
Identities = 28/117 (23%), Positives = 56/117 (47%), Gaps = 10/117 (8%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLN 472
+P + +LD N +++ + +R+ +NT + M S + C ++P Y + G+L
Sbjct: 546 KPANILLDKNYVSK--ISDVGLARLVPASVANTVTQYHMTSAAGTFCYIDPEYQQTGKLT 603
Query: 473 VTSNNLMFSEAVAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEP 529
S+ +FS + + Q +TA SP H +++ ++ T D + P + D P
Sbjct: 604 TKSD--IFSLGIMLLQI-----ITAKSPMGLAH-HVSRAIDKGTFKDMLDPVVPDWP 652
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 33.5 bits (73), Expect = 0.46
Identities = 36/194 (18%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 422 NMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLMFS 481
++ + L A +N R+ + + + E +TS+A C ++ + G + T+++L
Sbjct: 597 DLYSSHLEAVQNVVRLHKANANACLEEVSALTTSSA-CSID-EFLASG--DETTSSLFDE 652
Query: 482 EAVAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQIKYH 541
A+ + E L A +H + + F +L++E + ++
Sbjct: 653 LQSALSSHQGEMALFARELRQRFHTTMEQTQEMSEYTSTFFQKLMEESKNAETRAAEAND 712
Query: 542 LVIDSEQDLNEAFQQANKNSAANLESDLNKIGMK-----------RPNNFSEVASSNKKI 590
I+S D + ++ +K+ L +DL + R +NF + SSNK
Sbjct: 713 SQINSIIDFQKTYEAQSKSDTDKLIADLTNLVSSHIRRQHELVDSRLHNFKDAVSSNKTF 772
Query: 591 SNPNIVAENDFSSE 604
+ ++ A N+ + +
Sbjct: 773 LDEHVSAVNNLTKD 786
>At2g24370.1 68415.m02912 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 816
Score = 32.7 bits (71), Expect = 0.80
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 9/88 (10%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLN 472
+P + +LD N +++ + +R+ ++T + M ST+ C ++P Y + G L
Sbjct: 604 KPGNILLDRNFVSK--ISDVGLARLVPPTVADTVTQYRMTSTAGTFCYIDPEYQQTGMLG 661
Query: 473 VTSN----NLMFSEAVAVEQYNPEFGLT 496
V S+ +MF + + + P GLT
Sbjct: 662 VKSDIYSLGIMFLQLITAK---PPMGLT 686
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 31.1 bits (67), Expect = 2.4
Identities = 29/105 (27%), Positives = 53/105 (50%), Gaps = 8/105 (7%)
Query: 561 SAANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSS-EFACLESFLDDVTLNT 619
+ AN E++L+KI + NN E + + AEN+ S E +S + +LN+
Sbjct: 720 AVANAENELSKI-VDMLNNIREKVGNAVRQYR---AAENEVSGLEMELAKSQREIESLNS 775
Query: 620 Q---IETAIKSLEQTIDPSFPELLISSEVQEILGKIEEEQKNQQQ 661
+ +E + SLE P E+ E+++I+ K E+E +N ++
Sbjct: 776 EHNYLEKQLASLEAASQPKTDEIDRLKELKKIISKEEKEIENLEK 820
>At1g07330.1 68414.m00781 hypothetical protein
Length = 685
Score = 31.1 bits (67), Expect = 2.4
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 13/107 (12%)
Query: 563 ANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSE--FACLESFLD--DVTLN 618
++L+ ++++IG P SS+++ S IV E+D E F+ ES +D + T
Sbjct: 429 SDLQVEVSEIGSP-PTTVDGNNSSDEEKSR--IVNESDIGKETGFSGEESIVDRTEETQM 485
Query: 619 TQIETAIKSLEQTIDPSFPELLISSEVQ------EILGKIEEEQKNQ 659
+E K L +TI PE ++ +V+ +I G+ EEE+ ++
Sbjct: 486 LPVEKVDKDLNETISKVSPETYVAKQVEGLSDGTDINGRSEEEESSK 532
>At4g39780.1 68417.m05633 AP2 domain-containing transcription
factor, putative similar to AP2 domain containing
protein RAP2.4,Arabidopsis thaliana
Length = 272
Score = 30.7 bits (66), Expect = 3.2
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 435 SRIQEIDES-NTFEIFDMPSTSTALCQVEPNYFEEGQLNVTSNNLMFSEAVAVEQYNPEF 493
+++QEI +S E D+P + T L + Y E + S+ FS+ VE +PE
Sbjct: 173 AKLQEICQSLRKTEDIDLPCSETELFPPKTEYQESEYGFLRSDENSFSDESHVESSSPES 232
Query: 494 GLT 496
G+T
Sbjct: 233 GIT 235
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain, PF00097:
Zinc finger, C3HC4 type (RING finger)
Length = 1287
Score = 30.3 bits (65), Expect = 4.3
Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 6/122 (4%)
Query: 428 LFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPN----YFEEGQLNVTSNNLMFSEA 483
L E S Q +ES EIFD+ S + ++P+ +FE QL +++ N + ++
Sbjct: 604 LILKERSKPAQACEESTKKEIFDLESETGECAPLKPSGRSKHFEHSQL-LSNENKVGGDS 662
Query: 484 VAVEQYNPEFGLTATSPDVTYHDYLNVQENEITLDDFIFPELIDEPQGIQSPTQI-KYHL 542
V P G P + + ++T + + + + P ++ KY +
Sbjct: 663 VGKVTGRPAAGTLVVCPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDV 722
Query: 543 VI 544
V+
Sbjct: 723 VV 724
>At5g16715.1 68418.m01957 tRNA synthetase class I (I, L, M and V)
family protein similar to SP|P11931 Valyl-tRNA
synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (VALRS)
{Bacillus stearothermophilus}; contains Pfam profile
PF00133: tRNA synthetases class I (I, L, M and V)
Length = 970
Score = 29.9 bits (64), Expect = 5.6
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 535 PTQIKYHLVIDSEQDLNEAFQQANKNSAANLESDLNKIGMKRPNNFSEVASSNKKISNPN 594
PT L S LN F + + S LN I +R +FS AS N ++P
Sbjct: 10 PTPTTTLLSPSSPHQLNTLFFTRRRRRLIS-PSRLNSIFSQRRFSFSAAASGNNVFTSPE 68
Query: 595 IVAENDFSSE 604
DFSSE
Sbjct: 69 TSKTFDFSSE 78
>At1g04600.1 68414.m00454 myosin, putative similar to myosin
(GI:499047) [Arabidopsis thaliana]
Length = 1730
Score = 29.9 bits (64), Expect = 5.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 602 SSEFACLESFLDDVTLNTQIETAIKSLEQTIDPSFPELLISSEVQEILGKIEEEQKNQQQ 661
S E + L+S L D+ L +IE K LE T D + + V + KI+E ++ ++
Sbjct: 969 SKEISDLQSALQDMQL--EIEELSKGLEMTNDLAAENEQLKESVSSLQNKIDESERKYEE 1026
>At5g10250.1 68418.m01190 phototropic-responsive protein, putative
similar to root phototropism RPT2 [Arabidopsis thaliana]
gi|6959488|gb|AAF33112, a signal transducer of
phototropic response PMID:10662859
Length = 607
Score = 29.5 bits (63), Expect = 7.4
Identities = 27/115 (23%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 508 LNVQENEITLDDFIFPEL-----IDEPQGIQSPTQIKYHLVIDSEQDLNEAFQQANKNSA 562
L++Q N+IT FP + I + S ++ YHL +++ + F+ K
Sbjct: 54 LSIQVNDITFKAHKFPLISKCGYISSIELKPSTSENGYHLKLENFPGGADTFETILK-FC 112
Query: 563 ANLESDLNKIGMKRPNNFSEVASSNKKISNPNIVAENDFSSEFACLESFLDDVTL 617
NL DLN + + SE ++ N++++ + F L S+ D +T+
Sbjct: 113 YNLPLDLNPLNVAPLRCASEYLYMTEEFEAGNLISKTEAFITFVVLASWRDTLTV 167
>At5g66910.1 68418.m08434 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 815
Score = 29.1 bits (62), Expect = 9.8
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 2 VHTNPDFNPEFTDAVLKLFNGFLITTTYRGIIVVVSKNVHQYLGFPELDLLGQNLVNLTH 61
+HT+PD + +LK NGF + G I + + ++ + G E G+ ++ +
Sbjct: 338 LHTSPDEYEDLLQKILKRCNGFPLVIEVVG-ISLKGQALYLWKGQVESWSEGETILGNAN 396
Query: 62 PRDRQMLLEKLKPRSQVLGPN 82
P RQ +L+P VL P+
Sbjct: 397 PTVRQ----RLQPSFNVLKPH 413
>At4g25160.1 68417.m03622 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 835
Score = 29.1 bits (62), Expect = 9.8
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNT-FEIFDMPSTSTALCQVEPNYFEEGQL 471
+P + +LD N +++ S + ++D +T F I+ S LC ++P Y G++
Sbjct: 604 KPANILLDHNFVSK--VGDVGLSTMVQVDPLSTKFTIYKQTSPVGTLCYIDPEYQRTGRI 661
Query: 472 NVTSNNLMF 480
+ S+ F
Sbjct: 662 SSKSDIYSF 670
>At1g78940.1 68414.m09203 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 680
Score = 29.1 bits (62), Expect = 9.8
Identities = 29/118 (24%), Positives = 54/118 (45%), Gaps = 13/118 (11%)
Query: 413 EPQDAILDINMINQPLFATENSSRIQEIDESNTFEIFDMPSTSTALCQVEPNYFEEGQLN 472
+P + +LD N +++ + +R+ N + + + S + C ++P Y + G L
Sbjct: 501 KPGNVLLDYNYVSK--ISDVGLARLVPAVAENVTQ-YRVTSAAGTFCYIDPEYQQTGMLG 557
Query: 473 VTSNNLMFSEAVAVEQYNPEFGLTATSP-DVTYHDYLNVQENEITLDDFIFPELIDEP 529
V S+ ++S + + Q LTA P + Y Y+ E TL D + P + D P
Sbjct: 558 VKSD--VYSLGIMLLQI-----LTAKQPMGLAY--YVEQAIEEGTLKDMLDPAVPDWP 606
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,468,233
Number of Sequences: 28952
Number of extensions: 666954
Number of successful extensions: 1747
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1744
Number of HSP's gapped (non-prelim): 16
length of query: 661
length of database: 12,070,560
effective HSP length: 86
effective length of query: 575
effective length of database: 9,580,688
effective search space: 5508895600
effective search space used: 5508895600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 62 (29.1 bits)
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