Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000656-TA|BGIBMGA000656-PA|undefined
         (85 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.8  

>SB_36204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 52 PALALLLNTQRNQMPLDPIICPQPSGSDE 80
          P  AL+  T+ N+    P++CP+    D+
Sbjct: 67 PLSALISGTETNKQRCPPLVCPKAFMKDD 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.132    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,160,841
Number of Sequences: 59808
Number of extensions: 44313
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 1
length of query: 85
length of database: 16,821,457
effective HSP length: 62
effective length of query: 23
effective length of database: 13,113,361
effective search space: 301607303
effective search space used: 301607303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)