Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000656-TA|BGIBMGA000656-PA|undefined
         (85 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   2.9  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    20   3.8  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    19   8.7  

>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 20.6 bits (41), Expect = 2.9
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 47  MRQNSPALALLLNTQRNQ 64
           ++QN P    + NTQRN+
Sbjct: 357 IKQNVPQSGRVNNTQRNE 374


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 7/21 (33%), Positives = 14/21 (66%)

Query: 49  QNSPALALLLNTQRNQMPLDP 69
           +N+P +   +NT +  +PL+P
Sbjct: 101 RNTPEVHQAINTCQPSIPLEP 121


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 19.0 bits (37), Expect = 8.7
 Identities = 5/13 (38%), Positives = 9/13 (69%)

Query: 59  NTQRNQMPLDPII 71
           N   ++ PLDP++
Sbjct: 435 NEDEDETPLDPVV 447


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.132    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,179
Number of Sequences: 429
Number of extensions: 578
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 85
length of database: 140,377
effective HSP length: 47
effective length of query: 38
effective length of database: 120,214
effective search space:  4568132
effective search space used:  4568132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.8 bits)
S2: 37 (19.0 bits)