GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000656-TA|BGIBMGA000656-PA|undefined
         (85 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1069 + 8731567-8731632,8732120-8732281,8733028-8733081,873...    25   5.7  
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395     25   10.0 

>06_01_1069 +
           8731567-8731632,8732120-8732281,8733028-8733081,
           8733557-8733630,8733706-8733786,8734902-8735079,
           8735336-8735506,8736113-8736202,8736284-8736331,
           8736447-8736562,8736655-8736733,8737101-8737223
          Length = 413

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 49  QNSPALALLLNTQRNQMPLDPIICPQPSGSDEQPP 83
           Q+ PA  +  +  R   P  P++ P+P+    QPP
Sbjct: 94  QSQPATPVA-SVARTPPPQAPVVTPEPAPPSAQPP 127


>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
          Length = 794

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 58  LNTQRNQMPLDPIICPQPSGSDEQPP 83
           +++ R Q P  PI+  +PS    QPP
Sbjct: 275 VSSLRTQPPPPPIVVMRPSSRPPQPP 300


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,680
Number of Sequences: 37544
Number of extensions: 44092
Number of successful extensions: 87
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 86
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 14,793,348
effective HSP length: 64
effective length of query: 21
effective length of database: 12,390,532
effective search space: 260201172
effective search space used: 260201172
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)