GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000656-TA|BGIBMGA000656-PA|undefined
         (85 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC112345-1|AAI12346.1|  955|Homo sapiens chordin, isoform a prot...    27   9.3  
BC029879-1|AAH29879.1|  413|Homo sapiens Unknown (protein for IM...    27   9.3  
AY358926-1|AAQ89285.1|  954|Homo sapiens chordin protein.              27   9.3  
AK074147-1|BAB84973.1|  503|Homo sapiens FLJ00220 protein protein.     27   9.3  
AF209928-1|AAG35767.1|  955|Homo sapiens chordin protein.              27   9.3  
AF136633-1|AAF70237.1|   58|Homo sapiens chordin protein.              27   9.3  
AF076612-1|AAC69835.1|  801|Homo sapiens chordin protein.              27   9.3  

>BC112345-1|AAI12346.1|  955|Homo sapiens chordin, isoform a
           protein.
          Length = 955

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 721 NYDPLCSLCTCQRRTVICDPVVCPPPS 747


>BC029879-1|AAH29879.1|  413|Homo sapiens Unknown (protein for
           IMAGE:5175884) protein.
          Length = 413

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 179 NYDPLCSLCTCQRRTVICDPVVCPPPS 205


>AY358926-1|AAQ89285.1|  954|Homo sapiens chordin protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 721 NYDPLCSLCTCQRRTVICDPVVCPPPS 747


>AK074147-1|BAB84973.1|  503|Homo sapiens FLJ00220 protein protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 434 NYDPLCSLCTCQRRTVICDPVVCPPPS 460


>AF209928-1|AAG35767.1|  955|Homo sapiens chordin protein.
          Length = 955

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 721 NYDPLCSLCTCQRRTVICDPVVCPPPS 747


>AF136633-1|AAF70237.1|   58|Homo sapiens chordin protein.
          Length = 58

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50 NSPALALLLNTQRNQMPLDPIICPQPS 76
          N   L  L   QR  +  DP++CP PS
Sbjct: 17 NYDPLCSLCTCQRRTVICDPVVCPPPS 43


>AF076612-1|AAC69835.1|  801|Homo sapiens chordin protein.
          Length = 801

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 50  NSPALALLLNTQRNQMPLDPIICPQPS 76
           N   L  L   QR  +  DP++CP PS
Sbjct: 567 NYDPLCSLCTCQRRTVICDPVVCPPPS 593


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.316    0.132    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,783,615
Number of Sequences: 224733
Number of extensions: 272032
Number of successful extensions: 708
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 73,234,838
effective HSP length: 63
effective length of query: 22
effective length of database: 59,076,659
effective search space: 1299686498
effective search space used: 1299686498
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)