GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000656-TA|BGIBMGA000656-PA|undefined
         (85 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47740.1 68418.m05898 expressed protein                             27   2.0  
At5g07980.1 68418.m00928 dentin sialophosphoprotein-related cont...    26   2.7  
At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B, pu...    26   3.6  
At5g53870.1 68418.m06701 plastocyanin-like domain-containing pro...    25   4.7  
At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM dom...    25   8.2  

>At5g47740.1 68418.m05898 expressed protein 
          Length = 174

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/26 (34%), Positives = 16/26 (61%)

Query: 47  MRQNSPALALLLNTQRNQMPLDPIIC 72
           M ++SPA + ++  Q+   P+DP  C
Sbjct: 138 MMESSPAKSPIVQRQKKDQPVDPFAC 163


>At5g07980.1 68418.m00928 dentin sialophosphoprotein-related
          contains weak similarity to Swiss-Prot:Q9NZW4 dentin
          sialophosphoprotein precursor [Homo sapiens]
          Length = 1501

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 46 NMRQNSPALALLLNTQRNQMPLDP 69
          N RQ  P+L   L + R Q P+DP
Sbjct: 43 NQRQIDPSLTADLKSYRTQQPVDP 66


>At1g06960.1 68414.m00740 small nuclear ribonucleoprotein U2B,
           putative / spliceosomal protein, putative non-consensus
           splice donor GC at exon 4; similar to spliceosomal
           protein (U2B) GI:169588 from [Solanum tuberosum]
          Length = 229

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 3/24 (12%)

Query: 60  TQRNQMPLDPIICPQPSGSDEQPP 83
           T +N MP+ P    QPSG D  PP
Sbjct: 133 TTQNGMPVPPF---QPSGQDTMPP 153


>At5g53870.1 68418.m06701 plastocyanin-like domain-containing
           protein contains similarity to SP|Q02917 Early nodulin
           55-2 precursor {Glycine max}; PF02298: Plastocyanin-like
           domain
          Length = 370

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 49  QNSPALALLLNTQRNQMPLDPIICPQPSGSDEQPPK 84
           Q    L +++   RNQ P  P   P PS S  QPPK
Sbjct: 118 QKGQKLIVVVLAVRNQ-PSAPAHSPVPSVSPTQPPK 152


>At1g03370.1 68414.m00316 C2 domain-containing protein / GRAM
           domain-containing protein contains Pfam profiles
           PF00168: C2 domain; contains PF02893: GRAM domain;
           similar to Chain A, Crystal Structure Of Synaptotagmin
           Iii C2aC2B Length(GI:6980525); similar to Synaptotagmin
           III (SytIII) (Swiss-Prot:P40748) [Rattus norvegicus]
          Length = 1859

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 62  RNQMPLDPIICPQPSGSDE 80
           R + P+DP  C  PS SD+
Sbjct: 975 RLESPIDPSTCASPSRSDD 993


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.132    0.427 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,521,379
Number of Sequences: 28952
Number of extensions: 34009
Number of successful extensions: 67
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 5
length of query: 85
length of database: 12,070,560
effective HSP length: 64
effective length of query: 21
effective length of database: 10,217,632
effective search space: 214570272
effective search space used: 214570272
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)