GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000655-TA|BGIBMGA000655-PA|IPR009053|Prefoldin
         (260 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.69 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.7  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   4.9  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   8.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 13/52 (25%), Positives = 25/52 (48%)

Query: 118  QQQEYRLKYLQAQQEVEELKRQLDVIEFDNKQVSDQIQIEIQKVKMQFQEKL 169
            QQQ+ +      QQ ++    Q  + +   K ++ QIQ    + + Q Q+K+
Sbjct: 1062 QQQQLKRVVTNQQQSIQTSGMQRIIAQIGGKPIAVQIQQSPHQQQQQQQQKI 1113


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 117 EQQQEYRLKYLQAQQEVEELKRQLD-VIEFDNKQVSDQIQIEIQKVKMQFQEKLQ 170
           EQQQ+     +QAQQ+ ++ ++Q   VI     Q   Q Q + Q+ + Q Q++ Q
Sbjct: 413 EQQQQ-----MQAQQQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 213 KLIITANSLEQEKAIRSDLSEENKLLK 239
           +L+I  NS++Q  +  S +SEEN  LK
Sbjct: 89  ELLIDENSVKQLVSDCSTISEENPHLK 115


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 66  ELKLSEICHKEIPGHKEYRKYTEK 89
           E  +S  C +  PG K++RK   K
Sbjct: 85  EASVSLFCPRAKPGEKKFRKVITK 108


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 146 DNKQVSDQIQIEIQKVKMQFQEKLQELAPLPDLLKGAQIQLQ 187
           D  + S +  I I  +      +LQE +PL DL +  ++ LQ
Sbjct: 204 DGDESSCRADIRILDLSRNEITRLQENSPLLDLRQLQELHLQ 245


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 227 IRSDLSEENKLLKNMISEKGKEIDEISKSLDDHK 260
           +R+DL E     K+ +  K +E     KSLDD K
Sbjct: 101 LRNDLFECENKEKSNVCLKFEEQKRRKKSLDDVK 134


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.129    0.326 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,914
Number of Sequences: 429
Number of extensions: 2505
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 260
length of database: 140,377
effective HSP length: 56
effective length of query: 204
effective length of database: 116,353
effective search space: 23736012
effective search space used: 23736012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)