Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000654-TA|BGIBMGA000654-PA|undefined
         (420 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    25   1.3  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   1.8  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 330 PLSHNGTLAATGDDGKLRLIVPVS----PSESTSDVAEIHP 366
           P ++N  LAATG D  + LI  +S    PS   S + ++ P
Sbjct: 509 PNTYNRFLAATGGDHVISLIDEISFTFPPSPPLSQIHDLSP 549


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.8
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 353 SPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITRTTSEKVPNRSEMMTALRS 412
           +P  ST  ++   P  S +T    L  P  V    P  P T TTS+ + + +   ++  S
Sbjct: 121 APPRSTPPLST--PSNSNATKSSGLTSPLSVSTSPPGKPATSTTSQNLSSPASSTSSTSS 178


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.310    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,264
Number of Sequences: 317
Number of extensions: 3207
Number of successful extensions: 5
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 2
length of query: 420
length of database: 114,650
effective HSP length: 59
effective length of query: 361
effective length of database: 95,947
effective search space: 34636867
effective search space used: 34636867
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)