GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000654-TA|BGIBMGA000654-PA|undefined
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    32   0.17 
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    32   0.17 
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb...    31   0.30 
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    29   1.6  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    29   1.6  
SPAC6B12.11 |drc1|sld1|DNA replication protein Drc1|Schizosaccha...    28   2.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    28   2.1  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    28   2.1  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    28   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.7  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    27   4.9  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    27   4.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    27   6.5  
SPCC364.06 |nap1||nucleosome assembly protein Nap1 |Schizosaccha...    27   6.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    26   8.6  

>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 42/169 (24%), Positives = 61/169 (36%), Gaps = 8/169 (4%)

Query: 240 NANQQFYQNSNAFPNIPPLTNHYSNSDLASLMNHR--TYKDQCNSTDELGAM-AQAMSLG 296
           NA+      S A  +  PL N  S        N    T+    ++T    +M        
Sbjct: 179 NASNTVSVTSPASSSATPLPNQPSQQQFLVSKNDAFTTFVHSVHNTPMQQSMYVPQQQTS 238

Query: 297 HSENSLYSNSQATTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSE 356
           HS  + Y N  A     S P ++S   G PF  P   N + +A+  D  +  +   +P  
Sbjct: 239 HSSGASYQNESANPPVQS-PMQYSYSQGQPFSYPQHKNQSFSASPIDPSMSYVYR-APES 296

Query: 357 STSDVAEIHPVESPSTSGHTLKVPGQVELLAPAA--PITRTTSEKVPNR 403
            +S  A +    +      T  VP Q E   P    P  R TS K+  R
Sbjct: 297 FSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPELR-TSHKLAER 344


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 9/137 (6%)

Query: 238 TFNANQQFYQNSNAFP-NIPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLG 296
           TF ++  FY NS+  P ++P   + +++S+     ++ T     N++          +  
Sbjct: 341 TFTSSPPFYSNSSVIPTSVPSSVSSFTSSN----SSYTTTLTASNTSITYTGTGTGSATF 396

Query: 297 HSENSLYSNSQA-TTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPS 355
            S    YSNS    TS  SS   F+S +        + N T+  TG            P 
Sbjct: 397 TSSPPFYSNSSVIPTSVPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATFTSSPPF 456

Query: 356 ESTSDVAEIHPVESPST 372
            S S V    P  +PS+
Sbjct: 457 YSNSSVI---PTSAPSS 470



 Score = 31.5 bits (68), Expect = 0.23
 Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 15/167 (8%)

Query: 238 TFNANQQFYQNSNAFP-NIPPLTNHY--SNSDLASLMNHRTYKDQCNSTDELGAMAQAMS 294
           TF ++  FY NS+  P + P   + +  SNS   + +           T    A A + S
Sbjct: 449 TFTSSPPFYSNSSVIPTSAPSSVSSFTSSNSSYTTTLTASNTTVTFTGTGTGSATATSSS 508

Query: 295 LGHSENSL-----YSNSQATTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLI 349
             +S +S+      S S + +S  SSP   SS  G   +   S+  T   T      ++ 
Sbjct: 509 PYYSNSSIIVPTTVSTSGSVSSFSSSPSPTSSFSGTSALSSSSNEETTTTT------QVT 562

Query: 350 VPVSPSESTSDVAEIHPVESPSTSGHTLKVPGQV-ELLAPAAPITRT 395
              SP E+T+ +        P  +  T+     V E  + +A IT T
Sbjct: 563 YTTSPEETTTTMTTTTCSSRPEETISTVSTTSTVSESGSSSASITST 609


>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1254

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 23/81 (28%), Positives = 30/81 (37%)

Query: 252 FPNIPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTS 311
           F  IP +    S+S L+S  NH +  D     D    + +  S    E     +  A T 
Sbjct: 29  FSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPERELPTSPSHHANTE 88

Query: 312 KDSSPDEFSSDDGIPFIMPLS 332
            DSS          PF  PLS
Sbjct: 89  IDSSSSMLPPPSSDPFSSPLS 109


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 31/173 (17%), Positives = 67/173 (38%), Gaps = 3/173 (1%)

Query: 152 KGSQQQLSTEALINLFAQTKVSQNVENNNMKFSPFCVTPTSELTNGPTSAPCFGTMTNDQ 211
           K S++   T  + +    +  + N+++++   +      TS+  N       F    +  
Sbjct: 249 KNSKRADDTARMASRMKPSNFNNNIQSSSYGHASQSTKLTSQRDNDHQKDLNFSPYKSIP 308

Query: 212 IQNYLISKFQDMGGFSXXXXXXDQKPTFNANQQFYQNSNAFPNIPPLTNHYSNSDLASL- 270
           + N   S   ++ GFS      D      + ++F +NS   P    ++++ S S L  L 
Sbjct: 309 LNNRPYSPMSEIVGFSGSTTPLDTYGNRPSGKKFNKNSKFRPPGSTISSYSSASTLRRLP 368

Query: 271 --MNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDSSPDEFSS 321
                + + ++ NST   G   +A+       +  S++Q     D   +  S+
Sbjct: 369 RAPGSKVHAERQNSTFNSGISLRALRKEMGNTAPVSSNQLLKDADLVMENLST 421


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 24/99 (24%), Positives = 46/99 (46%), Gaps = 8/99 (8%)

Query: 262 YSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLY-SNSQATTSKDSSPDEFS 320
           +S SD++S + +   KD+ + T +L A  +     + EN++  S+S+   +K+S  +  S
Sbjct: 67  HSRSDVSSQVQNSPNKDEEHQTADLLASNEGNEKNNEENNVVSSDSKEAITKESGAELES 126

Query: 321 SDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTS 359
           S+       P S N  +  T   G+     P+  +   S
Sbjct: 127 SE-------PASTNSNVGMTTRSGRQSPRTPIGSTTPKS 158


>SPAC6B12.11 |drc1|sld1|DNA replication protein
           Drc1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 349 IVPVSPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITRTTSE 398
           ++P +PS++   VA+  P    + S + L+V     LL   AP  ++ SE
Sbjct: 150 MIPTTPSKNPEPVAQHTPTVLETPSSYRLQVYTSPNLLRVNAPCRKSLSE 199


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 141 INEATQSQISPKGSQQQLSTEALINLFAQTKVSQNVENNN 180
           ++ A  S  +   S + L   + +N F Q  V+ N  NNN
Sbjct: 346 VSNANSSNSNDGSSSKSLDVGSFVNAFKQLNVNDNSSNNN 385


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 351 PVSPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITRTTSEKVPNRSEMMTAL 410
           P+S S        I+P   PS +  T K+P     L  ++ +  TT+  V N ++    +
Sbjct: 387 PISGSSFPDGFKPINPTSFPSLTSSTKKIPSTT--LPTSSKMITTTTPSVSNNTQSSFLI 444

Query: 411 RSQWT 415
            S +T
Sbjct: 445 ISTFT 449


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 252 FPNIPPLTNHYSNSDLASLMNHRTYKDQC---NSTDELGAMAQAMSLGHSENSLYSNSQA 308
           F +I P + ++  S++   +   T K  C   NST  +G + +A+   + EN ++S    
Sbjct: 88  FVSIKPNSRNFQLSNILEPVI--TAKHTCIVYNSTGAIG-VEEALQRQYPENPIFSLITH 144

Query: 309 TTSKDSSPDEFSSDDGIPFIM 329
           T     S DEF   D  PF +
Sbjct: 145 TPVSQRSVDEFFFGDCAPFYL 165


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with
           EF hand and WH2 motif |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1794

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 6/74 (8%)

Query: 255 IPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDS 314
           IPP T +++ S L  + N    K+  ++    GA  Q+      +NS Y N   TT KD+
Sbjct: 904 IPPSTRNFTES-LNQVKN--LIKNDTSNRKPFGAENQSKL---KKNSFYDNPSETTEKDA 957

Query: 315 SPDEFSSDDGIPFI 328
           +    +  D   ++
Sbjct: 958 TLYRHNDSDASAYV 971


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 301 SLYSNSQATTSKDSSPDE-FSSDDGIPFIMPLS 332
           SL++ S ATTS  +S D+ FS DD I  +  LS
Sbjct: 21  SLFTQSIATTSASTSVDDGFSFDDSISRLNSLS 53


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 7/48 (14%)

Query: 234 DQKPTFNANQQFYQNSNAFPNIP-PL-TNHYSNSDLASLMNHRTYKDQ 279
           D     +A    +QNSNAF N P PL  +H S+  L S+     Y+DQ
Sbjct: 229 DGSTAIHAGPIQHQNSNAFSNYPYPLDASHLSSQQLLSM-----YRDQ 271


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 353 SPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITRTTS 397
           +PS+   D   + PV+S ST+      P     + P    T TT+
Sbjct: 827 NPSQYGCDNGALGPVQSSSTTSSITPTPTTTSSITPTPTTTSTTT 871


>SPCC364.06 |nap1||nucleosome assembly protein Nap1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 393

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 174 QNVENNNMKFSPFCVTPTSELTNGPTSAPCFG 205
           +NV  NN +       PT   T   TSAP FG
Sbjct: 3   ENVNINNKRAGKMSAAPTPHNTPSGTSAPNFG 34


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 337 LAATGDDGKLRLIVPVSPSESTSDVAEIHPVESPSTSGHTLKVPGQV 383
           L AT +DG ++LI     S    D+  I  ++ PS   H L   GQ+
Sbjct: 750 LVAT-EDGVVQLIKQPGASLDAGDILGILTLDDPSRVTHALPFDGQL 795


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.310    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,705,022
Number of Sequences: 5004
Number of extensions: 67737
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 19
length of query: 420
length of database: 2,362,478
effective HSP length: 75
effective length of query: 345
effective length of database: 1,987,178
effective search space: 685576410
effective search space used: 685576410
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)