Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000654-TA|BGIBMGA000654-PA|undefined
(420 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799 31 2.3
06_01_1112 - 9157776-9158149,9158248-9161158 31 2.3
06_03_0933 + 26067109-26067232,26067334-26067486,26068929-260692... 30 3.0
11_06_0089 - 19932292-19932909,19933628-19933830,19934003-19934192 30 4.0
01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571 30 4.0
11_01_0687 - 5651002-5651453,5651535-5651951,5652621-5653338,565... 29 5.3
04_01_0222 - 2805329-2805780,2805866-2806611,2806730-2806778,280... 29 5.3
07_03_1723 - 29038701-29039213,29039341-29039413,29039504-290395... 29 7.0
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 29 7.0
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 29 7.0
10_05_0011 - 7822847-7822880,7823653-7823754,7823859-7824106,782... 29 9.2
03_06_0742 + 35900505-35900519,35901230-35901281,35901647-359017... 29 9.2
03_06_0673 - 35446537-35446629,35447001-35448548 29 9.2
03_05_0582 + 25823862-25824459,25824915-25825063,25825691-258259... 29 9.2
>10_07_0051 - 12373146-12373517,12375836-12376105,12377560-12377799
Length = 293
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 308 ATTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTSDVA 362
A S +S S ++ + + PL+H + A + + RL + PSE +DVA
Sbjct: 3 AVRSAAASASRVSREEAVARMPPLAHREVMLAVAGEAEARLGARLLPSEVPADVA 57
>06_01_1112 - 9157776-9158149,9158248-9161158
Length = 1094
Score = 30.7 bits (66), Expect = 2.3
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 294 SLGHSENSLYSNSQATTSKDSSPDEFSSDDGIPFIMPLSHN 334
S+GH + Y N DS PD FS+ G+ I+ +SHN
Sbjct: 631 SIGHLQMLGYLNLSVNEFHDSIPDSFSNLSGLQ-ILDISHN 670
>06_03_0933 +
26067109-26067232,26067334-26067486,26068929-26069279,
26069375-26069451,26069665-26070982,26071948-26072009,
26072253-26072309
Length = 713
Score = 30.3 bits (65), Expect = 3.0
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 14/114 (12%)
Query: 221 QDMGGFSXXXXXXDQKPTFNANQQFYQNSNAFP------NIPPLT--NHYSNSDLASLMN 272
Q GGFS +Q P +N +F +N FP N PL N S + +++ N
Sbjct: 450 QSNGGFSVPA---NQFPV-QSNGEFLAPTNQFPVQYPEVNNQPLVQMNQSSTNHFSTIGN 505
Query: 273 HRTYKDQCNSTDELGAMAQAM--SLGHSENSLYSNSQATTSKDSSPDEFSSDDG 324
+ D N + A +M LGH++ + + SQA + + F++ G
Sbjct: 506 DYQFPDLANCSKYWQPTAPSMFPDLGHNDGTSFRPSQANIANINQLSSFAASSG 559
>11_06_0089 - 19932292-19932909,19933628-19933830,19934003-19934192
Length = 336
Score = 29.9 bits (64), Expect = 4.0
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 322 DDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTSDVAEIHPVESPSTS 373
DD + F S++G++ A DDG ++L V+ EST V +IH + + S S
Sbjct: 239 DDDVVFA-DSSNDGSVLAVADDGVIKLARSVAVVESTG-VLKIHAIIARSDS 288
>01_05_0468 - 22490672-22491697,22496010-22496068,22496160-22496571
Length = 498
Score = 29.9 bits (64), Expect = 4.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 351 PVSPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITRTTSEKVPNRSEMMTA 409
P SPS + + A ESPS G+ LK G ++ L P + ++ +R + A
Sbjct: 286 PRSPSTAVAMAAAAAGAESPSRRGNKLKFLGNIKKLLPTSKKGHGRGDRRSSRKQSAAA 344
>11_01_0687 -
5651002-5651453,5651535-5651951,5652621-5653338,
5654106-5654417,5654482-5654814
Length = 743
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 239 FNANQQFYQNSNAFPNIPPLTNHYSNSDLASLMNHRTYKDQ-CNSTDEL 286
F AN Y + P PP +N Y + A MN Y+D NS + L
Sbjct: 697 FQANNPLYNGNPIAPMAPPFSNMYYAGNSAQAMN--AYRDAIANSVENL 743
>04_01_0222 -
2805329-2805780,2805866-2806611,2806730-2806778,
2807031-2807748,2808513-2808824
Length = 758
Score = 29.5 bits (63), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 239 FNANQQFYQNSNAFPNIPPLTNHYSNSDLASLMNHRTYKDQ-CNSTDEL 286
F AN Y + P PP +N Y + A MN Y+D NS + L
Sbjct: 712 FQANNPLYNGNPIAPMAPPFSNMYYAGNSAQAMN--AYRDAIANSVENL 758
>07_03_1723 - 29038701-29039213,29039341-29039413,29039504-29039594,
29039684-29039741,29039829-29039905,29040004-29040214,
29040339-29040386,29042496-29042608,29043270-29043341,
29044372-29046336,29046434-29046641,29046847-29047165,
29047813-29047937,29048024-29048157,29049089-29049164,
29049276-29049428,29049829-29050532,29050636-29050811,
29050945-29051107,29051199-29051341,29051802-29051914,
29053113-29053237,29053867-29054016,29054753-29054921,
29055201-29055418,29055499-29055709
Length = 2135
Score = 29.1 bits (62), Expect = 7.0
Identities = 23/86 (26%), Positives = 37/86 (43%)
Query: 335 GTLAATGDDGKLRLIVPVSPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAPITR 394
G L ++ KL P+S S S DV + + +SG T +P L I +
Sbjct: 1101 GQLKSSDQTPKLGSSSPLSFSYSHKDVWDNISSSNVPSSGTTHTMPKSSTLTFKTTVIPK 1160
Query: 395 TTSEKVPNRSEMMTALRSQWTRHTTK 420
T + +P+ S +MT + + T K
Sbjct: 1161 TNTSTLPDLSPLMTGSKFSLSPLTVK 1186
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 29.1 bits (62), Expect = 7.0
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 285 ELGAMAQAMSLGHSENSLYSNSQATTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGD-- 342
E A A A++ S+ + S + AT + S F + + + T A G
Sbjct: 1791 EAAASAVAVAAISSDEIVGSGADATAASASDNKSFGNKNLAGLASGDVFDNTEAIAGQSS 1850
Query: 343 -DGKLRLIVPVSPSESTSDVAEIHPVESPSTSGHTL-KVPG 381
D L + +P S T ++ HP+ SP SG L + PG
Sbjct: 1851 TDEPLSVALPADLSVDTPPMSLWHPLPSPQASGPMLSQFPG 1891
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 29.1 bits (62), Expect = 7.0
Identities = 34/131 (25%), Positives = 54/131 (41%), Gaps = 8/131 (6%)
Query: 258 LTNHYSNSDLASLMNHRTYK---DQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDS 314
L++ Y+ + AS HR K D + DE+ A + ++ H L + Q
Sbjct: 61 LSDQYNGINDASHGLHRKRKRNLDGASDDDEVDAYSNQITEEHYRTMLSEHVQKYRRSKF 120
Query: 315 SPDEFSSDDGIPFIMPLSH-NGTLAATGDDGKLRLIVPVSPSESTSDVAEIHPVESPSTS 373
D FSSD I+P H NG+ T R + + E+T AE + +S +
Sbjct: 121 KEDVFSSDPP-QVIVPQKHKNGSARVTKYRSDTRNVAMLGGVEAT---AEYNGTKSTNAY 176
Query: 374 GHTLKVPGQVE 384
G KV ++
Sbjct: 177 GGFNKVVASLD 187
>10_05_0011 -
7822847-7822880,7823653-7823754,7823859-7824106,
7824195-7824240,7824368-7825984,7826673-7826797,
7826915-7829083
Length = 1446
Score = 28.7 bits (61), Expect = 9.2
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 247 QNSNAFPNIPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENS-LYSN 305
Q N P L NH + N + +C S +G + A SL +E LY +
Sbjct: 229 QGGNLKTGSPVLVNHLQHGFHVQHFNGWMNQVECQSAPHVGPASSAASLDPTEEKILYGD 288
Query: 306 SQATTSKDSSPDEFSSDDGIPFIMPLSHNG 335
T D S DG+P S NG
Sbjct: 289 DNNFTGLLGEDD---SSDGVPGHDNSSGNG 315
>03_06_0742 +
35900505-35900519,35901230-35901281,35901647-35901772,
35902303-35902613,35902745-35902988,35903726-35903976,
35904071-35904277,35904546-35904713,35904798-35905127,
35905266-35905400
Length = 612
Score = 28.7 bits (61), Expect = 9.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 16 PGINLPDLPECVTKVDIPDADVVGESA 42
P N+P L +C+ K+ PD DV+ A
Sbjct: 415 PDANVPPLDKCLKKITEPDPDVIDYQA 441
>03_06_0673 - 35446537-35446629,35447001-35448548
Length = 546
Score = 28.7 bits (61), Expect = 9.2
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 316 PDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTSDVAE 363
P E + D + ++M + NG + DG+L+ I+ SP +E
Sbjct: 482 PGEIVTQDSLSYLMDVRDNGIAISGAADGELKSIMLSSPERKRKPQSE 529
>03_05_0582 +
25823862-25824459,25824915-25825063,25825691-25825960,
25826031-25826161,25826545-25826662,25826737-25826829,
25826987-25827064,25827158-25827224,25828780-25829111
Length = 611
Score = 28.7 bits (61), Expect = 9.2
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 336 TLAATGDDGKLRLIVPVS--PSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAA 390
T A D+ + R +P S P ST + P SP+ G +++ P + EL AP++
Sbjct: 14 TRRAASDEDQERPSLPPSLEPGMSTMPPSSSAPCGSPACGGTSMEEPSREELPAPSS 70
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.310 0.125 0.354
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,331,540
Number of Sequences: 37544
Number of extensions: 388218
Number of successful extensions: 782
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 776
Number of HSP's gapped (non-prelim): 15
length of query: 420
length of database: 14,793,348
effective HSP length: 84
effective length of query: 336
effective length of database: 11,639,652
effective search space: 3910923072
effective search space used: 3910923072
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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