GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000654-TA|BGIBMGA000654-PA|undefined
         (420 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   1.6  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    24   2.8  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   6.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   6.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   6.4  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 266 DLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDSSPDEFSSDDGI 325
           D+++ +N + YK      DE      + S     + LY +S+++ + D  P E+  +D +
Sbjct: 933 DVSTPVNKKVYKQNDYIVDE------SSSSSFYSSFLYKSSESSCNPDQKPTEYLLEDSM 986


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.8 bits (49), Expect = 2.8
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 353 SPSESTSDVAEIHPVESPSTSG 374
           S S   SDV E+ PV+S  +SG
Sbjct: 431 SLSGDESDVVELQPVKSSKSSG 452


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 13 VPTPGINLPDLPECVTKVDIPDADVV 38
          +P   I+  D  EC+ KV   +ADVV
Sbjct: 58 IPVSCISGRDRYECIEKVGKKEADVV 83


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 13 VPTPGINLPDLPECVTKVDIPDADVV 38
          +P   I+  D  EC+ KV   +ADVV
Sbjct: 58 IPVSCISGRDRYECIEKVGKKEADVV 83


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 13 VPTPGINLPDLPECVTKVDIPDADVV 38
          +P   I+  D  EC+ KV   +ADVV
Sbjct: 58 IPVSCISGRDRYECIEKVGKKEADVV 83


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.2 bits (45), Expect = 8.5
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 171 KVSQNVENNNMKFSPFCVTPTSELTNGPTSAPCF 204
           K  + V+ N   F P+  TP  E    PT    F
Sbjct: 222 KALRMVDENINGFDPYVKTPNDEELEKPTDKRMF 255


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.310    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,054
Number of Sequences: 429
Number of extensions: 4518
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 420
length of database: 140,377
effective HSP length: 59
effective length of query: 361
effective length of database: 115,066
effective search space: 41538826
effective search space used: 41538826
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)