GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000654-TA|BGIBMGA000654-PA|undefined
         (420 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g31920.1 68415.m03899 expressed protein                             37   0.022
At3g22960.1 68416.m02895 pyruvate kinase, putative similar to py...    31   1.4  
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea...    31   1.9  
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea...    31   1.9  
At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7...    31   1.9  
At4g31880.1 68417.m04531 expressed protein                             30   2.5  
At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pf...    29   5.8  
At3g24430.1 68416.m03066 expressed protein contains Pfam profile...    29   5.8  
At1g55540.1 68414.m06356 proline-rich family protein contains pr...    29   5.8  
At5g60370.1 68418.m07570 expressed protein predicted protein, Ar...    29   7.7  
At5g47480.1 68418.m05863 expressed protein                             29   7.7  

>At2g31920.1 68415.m03899 expressed protein
          Length = 585

 Score = 37.1 bits (82), Expect = 0.022
 Identities = 21/63 (33%), Positives = 32/63 (50%)

Query: 256 PPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDSS 315
           PP T H S SD +SL    + KD  +  DEL  ++    L + ENSL   S    +++++
Sbjct: 463 PPATKHCSVSDRSSLEGKSSLKDSTSLADELVQVSSQWFLKYLENSLNKGSFLVKTEETN 522

Query: 316 PDE 318
             E
Sbjct: 523 GKE 525


>At3g22960.1 68416.m02895 pyruvate kinase, putative similar to
           pyruvate kinase isozyme A, chloroplast precursor
           [Ricinus communis] SWISS-PROT:Q43117
          Length = 596

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 4/91 (4%)

Query: 303 YSNSQATTSKDSSPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTSDVA 362
           Y++ +A++S   SPD  SS       + LS NGT A   D+   R +V  + +  TS + 
Sbjct: 43  YTSIRASSSSSPSPDLDSSSSSSSSQVLLSPNGTGAVKSDE---RSVVATAVTTDTSGI- 98

Query: 363 EIHPVESPSTSGHTLKVPGQVELLAPAAPIT 393
           E+  V       +  +   + +L+    P T
Sbjct: 99  EVDTVTEAELKENGFRSTRRTKLICTIGPAT 129


>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 836

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 248 NSNAFPNIPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQ 307
           NS +    PP  NH  N DL S   HR+ +D   +  + G   Q++ +       +SN +
Sbjct: 570 NSRSRMGSPP-RNHDENYDLVS---HRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFE 625

Query: 308 ATTSKDSS 315
              S  SS
Sbjct: 626 GPVSNFSS 633


>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
           family protein contains 6 WD-40 repeats (PF00400);
           katanin p80 subunit (GI:3005601) [Strongylocentrotus
           purpuratus]
          Length = 837

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 248 NSNAFPNIPPLTNHYSNSDLASLMNHRTYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQ 307
           NS +    PP  NH  N DL S   HR+ +D   +  + G   Q++ +       +SN +
Sbjct: 570 NSRSRMGSPP-RNHDENYDLVS---HRSNRDPSPTESQKGGRFQSLVINRERRGRFSNFE 625

Query: 308 ATTSKDSS 315
              S  SS
Sbjct: 626 GPVSNFSS 633


>At1g62990.1 68414.m07113 homeodomain transcription factor (KNAT7)
           contains Pfam profiles:  PF03789 ELK domain, PF03790
           KNOX1 domain, PF03791 KNOX2 domain; similar to homeobox
           protein HD1 SP:P46606 from [Brassica napus]; identical
           to cDNA  homeodomain transcription factor KNAT7 (KNAT7)
           GI:11878229
          Length = 291

 Score = 30.7 bits (66), Expect = 1.9
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 275 TYKDQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDSSPDEFSSDDGIPFIMPLSHN 334
           ++K+Q      + A+   M+    EN+L+S + AT  + S       +D +P      ++
Sbjct: 103 SFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSEDEDDLPMDFSSDNS 162

Query: 335 GTLAATGDDGKLRLIVPVSPSESTSDVAE 363
           G   + G D  +    P+ P+ES   + E
Sbjct: 163 GVDFSGGHD--MTGFGPLLPTESERSLME 189


>At4g31880.1 68417.m04531 expressed protein
          Length = 873

 Score = 30.3 bits (65), Expect = 2.5
 Identities = 38/150 (25%), Positives = 58/150 (38%), Gaps = 17/150 (11%)

Query: 278 DQCNSTDELGAMAQAMSLGHSENSLYSNSQATTSKDSSPDEFSS-----DDGIPFIMPLS 332
           D  N+T+E   +   +     EN   S  QA  SKDS   E +      D       P  
Sbjct: 344 DLNNTTEEKPDVEHQIE--EKENESSSVKQADLSKDSDIKEETEPAELLDSKDVLTSPPV 401

Query: 333 HNGTLAATGDDGKLRLIVPVSPSESTSD---------VAEIHPVES-PSTSGHTLKVPGQ 382
            +   AAT  + +    V + PS+++ D         +AE  P +S P  + +  K    
Sbjct: 402 DSSVTAATSSENEKNKSVQILPSKTSGDETANVSSPSMAEELPEQSVPKKTANQKKKESS 461

Query: 383 VELLAPAAPITRTTSEKVPNRSEMMTALRS 412
            E + P+A I      + PN SE     +S
Sbjct: 462 TEEVKPSASIATEEVSEEPNTSEPQVTKKS 491


>At5g42010.1 68418.m05114 WD-40 repeat family protein contains Pfam
           PF00400: WD domain, G-beta repeat; similar to WD-repeat
           protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
           sapiens]
          Length = 709

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 318 EFSSDDGIPFIMPLSHNGT-LAATGDDGKLRL--IVPVSPSESTSDVAE 363
           EFS+ DG   +M  SH+G  LA+ G+D  +R+  I+     ++  +VAE
Sbjct: 252 EFSAHDGSIVVMKFSHDGKYLASAGEDCVVRVWNIIEDERRDNEFEVAE 300


>At3g24430.1 68416.m03066 expressed protein contains Pfam profile
           PF01883: Domain of unknown function
          Length = 532

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 26/91 (28%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 315 SPDEFSSDDGIPFIMPLSHNGTLAATGDDGKLRLIVPVSPSESTSDVAEIHPVESPSTSG 374
           S  E     GIP +  L    TL+A+GD G      P   S+  SDVA            
Sbjct: 363 SGSEVVKQFGIPHLFDLPIRPTLSASGDSG-----TPEVVSDPLSDVARTFQDLGVCVVQ 417

Query: 375 HTLKVPGQVELLAPAAPITRTTSEKVPNRSE 405
              K+  QV          +    KVPN  E
Sbjct: 418 QCAKIRQQVSTAVTYDKYLKAIRVKVPNSDE 448


>At1g55540.1 68414.m06356 proline-rich family protein contains
           proline rich extensin domain, INTERPRO:IPR002965
          Length = 915

 Score = 29.1 bits (62), Expect = 5.8
 Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 18/132 (13%)

Query: 298 SENSLYSNSQA---TTSKDSSPDEFS-SDDGIPFIMPLSHNGTLAATGDD---GK----- 345
           S ++L++ S A   ++S+D  P     S   +P    ++   T++ATG +   GK     
Sbjct: 351 STSTLFTASSAPVSSSSQDPVPASIPISSAPVPQTFSVTSTSTVSATGFNVPFGKPLTSV 410

Query: 346 ---LRLIVPVSPSESTSDVAEIH---PVESPSTSGHTLKVPGQVELLAPAAPITRTTSEK 399
              L    P +PS S    A      P  SPS+        GQ  L  P+AP ++ +S++
Sbjct: 411 KVDLNQAAPSTPSPSPGPTAGFTFNLPALSPSSPEMVSSSTGQSSLFPPSAPTSQVSSDQ 470

Query: 400 VPNRSEMMTALR 411
               S +  + R
Sbjct: 471 ASATSSLTDSSR 482


>At5g60370.1 68418.m07570 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 413

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 353 SPSESTSDVAEIHPVESPSTSGH-TLKVPGQVELLAPAAPITRTTSEKVPNRSEMMTALR 411
           SPSESTSD         P+ SG  ++  P    ++ P  PI   + E++      + A R
Sbjct: 4   SPSESTSDSLSTTTSTKPAQSGTVSISSPQSHHVVFPEIPIEIVSEEEMAILDAALAASR 63

Query: 412 S 412
           S
Sbjct: 64  S 64


>At5g47480.1 68418.m05863 expressed protein
          Length = 1350

 Score = 28.7 bits (61), Expect = 7.7
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 7/99 (7%)

Query: 294  SLGHSENSLYSNSQATTSKDSSPDEFSSDDGIPFIMPLSH-NGTLAATGDDGKLRLIVPV 352
            SLGH   S   N  + +S   S    +  +  P I P+S  +   +A G  G +R     
Sbjct: 1136 SLGHENKSEIKNEMSPSSGSWSSGSPTPSENSPGIPPVSQGSNQFSARGRMG-VRARYVD 1194

Query: 353  SPSESTSDVAEIHPVESPSTSGHTLKVPGQVELLAPAAP 391
            + ++ +S + +  PV+S         +P + +   PAAP
Sbjct: 1195 TYNQGSSSMYQSPPVQSSKP-----PIPAKAKFFVPAAP 1228


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.310    0.125    0.354 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,502,663
Number of Sequences: 28952
Number of extensions: 325584
Number of successful extensions: 701
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 700
Number of HSP's gapped (non-prelim): 11
length of query: 420
length of database: 12,070,560
effective HSP length: 83
effective length of query: 337
effective length of database: 9,667,544
effective search space: 3257962328
effective search space used: 3257962328
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)