Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000653-TA|BGIBMGA000653-PA|undefined
         (145 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    30   0.009
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           24   0.62 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   0.82 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    21   4.4  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    20   7.6  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
          protein.
          Length = 203

 Score = 29.9 bits (64), Expect = 0.009
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 4  VRTVGQAFEVCHKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAS 59
          + T G+  ++C + + +SPE P P     + EP  SC  +PVS       E  + S
Sbjct: 8  METAGEVLDLCVRKRPHSPE-PYPPRCPPIYEP--SCQYSPVSNSDSENSEVSSNS 60


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 20 NSPEQPAPSTSSAVDEPVA 38
          N P   APSTS+AV  P A
Sbjct: 32 NVPNFAAPSTSTAVQRPQA 50



 Score = 21.0 bits (42), Expect = 4.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 24  QPAPSTSSAVDEPVASCSDA 43
           +PAP  S  V EP +S + A
Sbjct: 91  EPAPLASPLVQEPGSSTTSA 110


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.4 bits (48), Expect = 0.82
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 17  MQNNSPEQPAPSTSSAVDEPVASCSDAP 44
           M+NN+P  P P    +  E V + S  P
Sbjct: 726 MENNAPPPPPPPRVESFAETVRTVSKIP 753


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)

Query: 25 PAPSTSSAVDEPVASCSDAPVSK 47
          P PS+  ++ E   +C D P S+
Sbjct: 61 PTPSSPRSISEDPLNCRDLPNSR 83


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 23 EQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
          E P P+  SA     +S   +P +   P+   SG+ ++
Sbjct: 9  ESPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPAS 46


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 20.2 bits (40), Expect = 7.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 78  RPKTLDLLPPP 88
           RPK+  L PPP
Sbjct: 272 RPKSASLSPPP 282


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,799
Number of Sequences: 317
Number of extensions: 1411
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 145
length of database: 114,650
effective HSP length: 51
effective length of query: 94
effective length of database: 98,483
effective search space:  9257402
effective search space used:  9257402
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)