Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000653-TA|BGIBMGA000653-PA|undefined
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    29   0.28 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    28   0.65 
SPAC1751.01c |gti1||gluconate transporter inducer Gti1|Schizosac...    27   1.1  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   2.0  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   3.5  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    24   8.0  
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos...    24   8.0  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 29.1 bits (62), Expect = 0.28
 Identities = 24/106 (22%), Positives = 35/106 (33%), Gaps = 3/106 (2%)

Query: 21  SPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPK 80
           +P  P  STSS    P  + + +  +   P    S + +TS              PT P 
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPPTGNSTTPVTPTVPP 361

Query: 81  T---LDLLPPPPRKEGKRSPQVNVWLEEQNVGSTFSGQNPESHITT 123
           T       PPPP          +  L      +T +   P  + TT
Sbjct: 362 TSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTT 407



 Score = 27.1 bits (57), Expect = 1.1
 Identities = 16/59 (27%), Positives = 21/59 (35%)

Query: 19  NNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPT 77
           NNS E    STSS  +   AS S    S    +   S + +TS              P+
Sbjct: 717 NNSTEVKTASTSSGTEIKTASTSSGSSSSSSYTPASSTSTTTSSVSSRQSSSSSSFTPS 775



 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/66 (24%), Positives = 23/66 (34%)

Query: 21  SPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPK 80
           +P  P  STSS    P  + + +  +   P    S + +TS              PT P 
Sbjct: 356 TPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPP 415

Query: 81  TLDLLP 86
           T    P
Sbjct: 416 TSSSTP 421


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.9 bits (59), Expect = 0.65
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 16  KMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEG--PSECESGAASTSXXXXXXXXXXXX 73
           K Q N P+ P P  S    +P    S  P  +    PSE    + ST+            
Sbjct: 234 KSQENKPK-PTPFGSGGPSKPTPFESHGPAKQISVQPSEHPKPSISTTTTGSSYRSAESS 292

Query: 74  XXPTRPKTLDLLP 86
             PT P    L P
Sbjct: 293 HAPTTPDHFKLTP 305


>SPAC1751.01c |gti1||gluconate transporter inducer
           Gti1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 22  PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTS 61
           P+ P  S+ S  +   AS S AP++   P       +STS
Sbjct: 210 PKSPPSSSPSTTNVSNASTSSAPINPRAPQTRRESISSTS 249


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)

Query: 76  PTRPKTLD---LLPPPPRKEGKRSPQVNVWLEEQNVGSTFSGQNPESH 120
           P  P  LD   L+PP    E    P+    +E +NVG+ ++     SH
Sbjct: 108 PKNPSILDHVSLIPPKSYYENGYFPEKETLVEARNVGAVYALHRIMSH 155


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 13/42 (30%), Positives = 19/42 (45%)

Query: 19  NNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
           + S     PS+SS      +S S  P+S    S   S A+S+
Sbjct: 141 STSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSS 182


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 52  ECESGAASTSXXXXXXXXXXXXXXPTRPKTLDLLPPPPR 90
           E  +G  ST+              PT PK L  LP  P+
Sbjct: 509 ETATGTTSTTFANAKRRPEDSNISPTNPKKLHTLPRSPQ 547


>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 556

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 17/61 (27%), Positives = 26/61 (42%)

Query: 1   MRIVRTVGQAFEVCHKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
           +R   T G A E     +++  E  + S+SS  D    S    P S    S   + ++ST
Sbjct: 68  LRRGHTSGHASEHTSSSRSSHDESDSMSSSSESDSDSVSSESNPKSYSDSSTSSARSSST 127

Query: 61  S 61
           S
Sbjct: 128 S 128


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,252
Number of Sequences: 5004
Number of extensions: 24981
Number of successful extensions: 83
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 77
Number of HSP's gapped (non-prelim): 9
length of query: 145
length of database: 2,362,478
effective HSP length: 67
effective length of query: 78
effective length of database: 2,027,210
effective search space: 158122380
effective search space used: 158122380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)