Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000653-TA|BGIBMGA000653-PA|undefined
(145 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.5
SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3) 28 2.6
SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.6
SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0) 28 3.5
SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8) 27 4.6
SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29) 27 4.6
SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07) 27 6.1
SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91) 27 8.1
SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22) 27 8.1
SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.1
SB_37989| Best HMM Match : LRR_adjacent (HMM E-Value=3.6) 27 8.1
SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11) 27 8.1
SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064) 27 8.1
>SB_45306| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1576
Score = 29.1 bits (62), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 20 NSPEQPAPSTSSAVDEPVASCSDAPVSKE 48
+ PEQ APST SA+ +P SC + + ++
Sbjct: 704 DKPEQ-APSTKSAIPKPAPSCPNTKIEEQ 731
>SB_33345| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.3 bits (60), Expect = 2.6
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 6 TVGQAFEVCHKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSK-EGPSECESGAASTS 61
T+G+A + N + PST P+AS S+ P+S G S SG T+
Sbjct: 305 TLGKALASIYSTDNGTTYSSNPSTPVGSPPPLASVSERPLSAGSGASGHSSGWGRTN 361
>SB_8330| Best HMM Match : Spb1_C (HMM E-Value=5.3)
Length = 230
Score = 28.3 bits (60), Expect = 2.6
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 23 EQPAPSTSSAVDEPVASCSDAPVSKEG---PSECESGAAST 60
EQ S + +D P + P S+E P E ESGAA+T
Sbjct: 179 EQKVVSFAERIDPPPSVIKTEPASEESADTPQELESGAANT 219
>SB_37649| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 188
Score = 28.3 bits (60), Expect = 2.6
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 25 PAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPKTLDL 84
P PST ++ +PVA P+S++ P + ++T T
Sbjct: 50 PQPSTQTSQSQPVAHSQPQPLSQQQPQVTRATTSTTVTQPNSQISINVASLKLGSSTFWF 109
Query: 85 LPP 87
LPP
Sbjct: 110 LPP 112
>SB_1002| Best HMM Match : OTCace_N (HMM E-Value=0)
Length = 563
Score = 27.9 bits (59), Expect = 3.5
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 15 HKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEGP 50
H+M P P TS + EPV+ PV+ + P
Sbjct: 129 HRMTGPEPLPPVADTSPHMSEPVSRGPSTPVAVQAP 164
>SB_52135| Best HMM Match : RCSD (HMM E-Value=4.8)
Length = 476
Score = 27.5 bits (58), Expect = 4.6
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 24 QPAPSTSSAVDEPVASCSDAPVSKEGPS 51
+P S+S++ ++P+ + + PVSK+ PS
Sbjct: 27 EPTTSSSASTEKPIKAKTPPPVSKKQPS 54
>SB_10678| Best HMM Match : HMG_box (HMM E-Value=1.3e-29)
Length = 494
Score = 27.5 bits (58), Expect = 4.6
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 8 GQAFEVCHKMQNNSPEQPAPSTSSAVDE 35
G + H++ ++ P+ P P + SAV E
Sbjct: 391 GDVYTALHRVNDDDPQSPQPDSPSAVPE 418
>SB_14171| Best HMM Match : Chitin_synth_2 (HMM E-Value=7.7e-07)
Length = 1188
Score = 27.1 bits (57), Expect = 6.1
Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 5 RTVGQAFEVCHKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSK 47
+T+ F C + N P+ AP+T++ D P + D+ S+
Sbjct: 899 KTIKYVFTCCRPAEPN-PDPQAPATNNQTDNPPSQYEDSSSSE 940
>SB_59003| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 605
Score = 26.6 bits (56), Expect = 8.1
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 97 PQVNV--WLEEQNVGSTFSGQNPESHITTLPERMNTLFKDFTRILLRR 142
P++N+ W E+ G T G NPES P+ + ++ ++T +L RR
Sbjct: 10 PKLNLKRWTEKSEDGETSIGYNPES--IPAPKAVK-VYSEYTPVLGRR 54
>SB_54069| Best HMM Match : zf-C3HC4 (HMM E-Value=0.91)
Length = 355
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 27 PSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPKTLDLLP 86
PST ++ +PVA P+S++ P + ++T T LP
Sbjct: 215 PSTQTSQSQPVAHSQPQPLSQQQPQVTRATTSTTGTQPNSQISINVASLKLGSSTFWFLP 274
Query: 87 P 87
P
Sbjct: 275 P 275
>SB_27892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1441
Score = 26.6 bits (56), Expect = 8.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 15 HKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEG 49
H+ + N+P Q P+T V +P A D V +G
Sbjct: 312 HEKEANAPPQHTPTTHGTVHKPTAVTLDHHVFTKG 346
>SB_7446| Best HMM Match : SH2 (HMM E-Value=2.7e-22)
Length = 699
Score = 26.6 bits (56), Expect = 8.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 3 IVRTVGQAFEVCHKMQNNSPEQ 24
++ TVGQAFE+ KM +P Q
Sbjct: 117 VINTVGQAFEIRFKMFLQNPPQ 138
>SB_1261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 123
Score = 26.6 bits (56), Expect = 8.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 76 PTRPKTLDLLPPPPRKEGKRSPQVNVW 102
P R + +D PPPP KR +N++
Sbjct: 63 PARHRVIDEAPPPPSHPQKRKRGLNIF 89
>SB_37989| Best HMM Match : LRR_adjacent (HMM E-Value=3.6)
Length = 192
Score = 26.6 bits (56), Expect = 8.1
Identities = 14/61 (22%), Positives = 23/61 (37%)
Query: 27 PSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPKTLDLLP 86
PST ++ +PVA P+S++ P + ++T T LP
Sbjct: 52 PSTQTSQSQPVAHSQPQPLSQQQPQVTRATTSTTGTQPNSQISINVASLKLGSSTFWFLP 111
Query: 87 P 87
P
Sbjct: 112 P 112
>SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11)
Length = 1182
Score = 26.6 bits (56), Expect = 8.1
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 26 APSTSSAVDEPVASCSDAPVSKEGPSECESGAASTS 61
+PS+ S V S S AP S + P + S +ASTS
Sbjct: 386 SPSSGSNGIRGVVSSSPAPRSADAPGKVSSMSASTS 421
>SB_2337| Best HMM Match : zf-CCHC (HMM E-Value=0.0064)
Length = 422
Score = 26.6 bits (56), Expect = 8.1
Identities = 28/126 (22%), Positives = 50/126 (39%), Gaps = 5/126 (3%)
Query: 21 SPEQPAPSTSSAVDEPVASCSDAPVS-KEGPSECESGAASTSXXXXXXXXXXXXXXPTRP 79
SP+ P P+ +++ E + AP + +E +S + S RP
Sbjct: 251 SPDLPLPTETASDREKDQDEAAAPATAQEHTISADSLIPTESSPKTGTEEPSPKTGEKRP 310
Query: 80 KTLDLLPPPPRKE---GKRSPQVNVWLEE-QNVGSTFSGQNPESHITTLPERMNTLFKDF 135
L L PPRKE G R+ ++++ ++ +G + S + L + D+
Sbjct: 311 PGLHLTDSPPRKESRAGSRAENERAFVKDLKSDARRIAGVDSSSRLDALALFLQHKHGDY 370
Query: 136 TRILLR 141
T LR
Sbjct: 371 THQKLR 376
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.127 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,193,241
Number of Sequences: 59808
Number of extensions: 212443
Number of successful extensions: 497
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 485
Number of HSP's gapped (non-prelim): 16
length of query: 145
length of database: 16,821,457
effective HSP length: 76
effective length of query: 69
effective length of database: 12,276,049
effective search space: 847047381
effective search space used: 847047381
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)
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