GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000653-TA|BGIBMGA000653-PA|undefined
         (145 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee homeobox-...    21   3.9  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   5.2  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   5.2  

>M29490-1|AAA27725.1|  109|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone E30. ).
          Length = 109

 Score = 21.4 bits (43), Expect = 3.9
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query: 15 HKMQNNSPEQPAPSTSSAVDE 35
          H  +N SPE+  P T+ + ++
Sbjct: 11 HNGKNGSPEEKRPRTAFSAEQ 31


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 100 NVWLEEQNVGSTFSGQNPESHITTLPE 126
           N WL   N   + S   P+S +   P+
Sbjct: 27  NTWLSLDNSNMSMSSVGPQSPLDMKPD 53


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 5.2
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 100 NVWLEEQNVGSTFSGQNPESHITTLPE 126
           N WL   N   + S   P+S +   P+
Sbjct: 27  NTWLSLDNSNMSMSSVGPQSPLDMKPD 53


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,637
Number of Sequences: 429
Number of extensions: 1755
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 145
length of database: 140,377
effective HSP length: 52
effective length of query: 93
effective length of database: 118,069
effective search space: 10980417
effective search space used: 10980417
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (20.9 bits)
S2: 40 (20.2 bits)