Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000653-TA|BGIBMGA000653-PA|undefined
(145 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 31 0.23
At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibit... 31 0.40
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa... 28 2.2
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa... 28 2.2
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa... 28 2.2
At2g32840.2 68415.m04021 proline-rich family protein Common fam... 27 3.8
At2g32840.1 68415.m04020 proline-rich family protein Common fam... 27 3.8
At4g31880.1 68417.m04531 expressed protein 27 5.0
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 27 6.6
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 27 6.6
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 6.6
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 6.6
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 6.6
At1g59630.1 68414.m06706 F-box family protein-related contains w... 27 6.6
At1g49490.1 68414.m05547 leucine-rich repeat family protein / ex... 27 6.6
At1g34740.1 68414.m04319 Ulp1 protease family protein contains P... 27 6.6
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 27 6.6
At1g18470.2 68414.m02305 zinc finger (C3HC4-type RING finger) fa... 27 6.6
At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger) fa... 27 6.6
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 31.5 bits (68), Expect = 0.23
Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 19 NNSPEQP---APSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXX 75
++SPE+ APS+S VD P+A S V P A S
Sbjct: 72 SSSPEEDSPLAPSSSPEVDSPLAPSSSPEVDSPQPPSSSPEADSPLPPSSSPEANSPQSP 131
Query: 76 PTRPKTLDLL------PPPPRKEGKRSP 97
+ PK L PPPP+ E SP
Sbjct: 132 ASSPKPESLADSPSPPPPPPQPESPSSP 159
>At1g62760.1 68414.m07083 invertase/pectin methylesterase inhibitor
family protein low similarity to extensin [Volvox
carteri] GI:21992
Length = 312
Score = 30.7 bits (66), Expect = 0.40
Identities = 29/104 (27%), Positives = 39/104 (37%), Gaps = 8/104 (7%)
Query: 21 SPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPK 80
SP P P + S P S +P+S PS S +S+ P+ P
Sbjct: 54 SPSSPPPLSLSPSSPPPPPPSSSPLSSLSPSLSPSPPSSSP-----SSAPPSSLSPSSPP 108
Query: 81 TLDLLP-PPPRKEGKRSPQVNVWLEEQNVGSTFSGQNPESHITT 123
L L P PP SP + L + ST+S Q +I T
Sbjct: 109 PLSLSPSSPPPPPPSSSPLSS--LSPSSSSSTYSNQTNLDYIKT 150
>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 19 NNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAS 59
++ P Q +PS S + P+ S + + GPSE +S + S
Sbjct: 221 SSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSES 261
>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 19 NNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAS 59
++ P Q +PS S + P+ S + + GPSE +S + S
Sbjct: 221 SSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSES 261
>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 375
Score = 28.3 bits (60), Expect = 2.2
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 19 NNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAS 59
++ P Q +PS S + P+ S + + GPSE +S + S
Sbjct: 221 SSHPRQVSPSASDSNSRPLNQSSPSEQDRAGPSELQSFSES 261
>At2g32840.2 68415.m04021 proline-rich family protein Common
family member: At1g04930 [Arabidopsis thaliana]
Length = 291
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 NSPEQPAPSTSSAVDEPVASCSDAPVSK 47
N P PS S AV P+ + S++PV++
Sbjct: 7 NPNPNPNPSVSVAVSTPIVTASESPVTQ 34
>At2g32840.1 68415.m04020 proline-rich family protein Common
family member: At1g04930 [Arabidopsis thaliana]
Length = 337
Score = 27.5 bits (58), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 20 NSPEQPAPSTSSAVDEPVASCSDAPVSK 47
N P PS S AV P+ + S++PV++
Sbjct: 7 NPNPNPNPSVSVAVSTPIVTASESPVTQ 34
>At4g31880.1 68417.m04531 expressed protein
Length = 873
Score = 27.1 bits (57), Expect = 5.0
Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 16 KMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXX 75
K + E+P+ +T+S+ + S SK G + +SG+AST
Sbjct: 784 KASSKKKEEPSKATTSSKSKSGPVKSVPAKSKTGKGKAKSGSASTPASKAKESASESESE 843
Query: 76 PTRPKTLDLLPPPPRKEGK 94
T PK + P K GK
Sbjct: 844 ET-PKEPE--PATKAKSGK 859
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 26.6 bits (56), Expect = 6.6
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 13 VCHKMQNNSPEQPAPSTSSAVDEPVASCSDAPVSKEGP 50
+C+ N+S ++P P T+ + +A+ P + P
Sbjct: 4 ICNSYANDSDDEPEPVTNERLTSKIAAAPSIPSKRPYP 41
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 503 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 539
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 449 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 485
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 503 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 539
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 503 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 539
>At1g59630.1 68414.m06706 F-box family protein-related contains weak
hit to TIGRFAM TIGR01640 : F-box protein interaction
domain; similar to F-box protein family, AtFBX9
(GI:20197985) [Arabidopsis thaliana] contains weak hit
to TIGRFAM TIGR01640 : F-box protein interaction domain;
Length = 239
Score = 26.6 bits (56), Expect = 6.6
Identities = 7/26 (26%), Positives = 19/26 (73%)
Query: 91 KEGKRSPQVNVWLEEQNVGSTFSGQN 116
++ KR+ ++N+W+ E+ +G+ +G +
Sbjct: 131 QQSKRTGEINIWVTEKEIGNGDNGDD 156
>At1g49490.1 68414.m05547 leucine-rich repeat family protein /
extensin family protein contains similarity to disease
resistance protein GI:3894383 from [Lycopersicon
esculentum]; contains leucine-rich repeats,
Pfam:PF00560; contains proline rich extensin domains,
INTERPRO:IPR002965
Length = 847
Score = 26.6 bits (56), Expect = 6.6
Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 5/69 (7%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAASTSXXXXXXXXXXXXXXPTRPKT 81
PEQP P S ++P PVS P+E + T P PK
Sbjct: 474 PEQPKPEESPKPEQPQIPEPTKPVSP--PNEAQ---GPTPDDPYDASPVKNRRSPPPPKV 528
Query: 82 LDLLPPPPR 90
D PPP+
Sbjct: 529 EDTRVPPPQ 537
>At1g34740.1 68414.m04319 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g27780,
At5g36850, At3g42730, At1g52020, At3g24390, At4g05280,
At1g25886, At4g03300
Length = 1383
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 483 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 519
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 26.6 bits (56), Expect = 6.6
Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 22 PEQPAPSTSSAVDEPVASCSDAPVSKEGPSECESGAAST 60
PEQ PS S EP S APV+ + PS S ST
Sbjct: 501 PEQTIPSHDSR--EPPTSMDKAPVTAKKPSRRMSTKGST 537
>At1g18470.2 68414.m02305 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 423
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 92 EGKRSPQVNVWLEEQNVGSTFSGQNPE 118
EG R Q ++ ++++ +TFSG PE
Sbjct: 349 EGSREEQARLYFDQESGYNTFSGHPPE 375
>At1g18470.1 68414.m02304 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type
Length = 467
Score = 26.6 bits (56), Expect = 6.6
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 92 EGKRSPQVNVWLEEQNVGSTFSGQNPE 118
EG R Q ++ ++++ +TFSG PE
Sbjct: 349 EGSREEQARLYFDQESGYNTFSGHPPE 375
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.127 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,595,553
Number of Sequences: 28952
Number of extensions: 143245
Number of successful extensions: 412
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 396
Number of HSP's gapped (non-prelim): 24
length of query: 145
length of database: 12,070,560
effective HSP length: 75
effective length of query: 70
effective length of database: 9,899,160
effective search space: 692941200
effective search space used: 692941200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
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