Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000652-TA|BGIBMGA000652-PA|undefined
         (233 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    22   4.7  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   8.2  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   8.2  

>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.8 bits (44), Expect = 4.7
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 57  EKKSHEKLKNSRSEPEFSEVRKKHRSRIEDGVSREYIGGARPRPLSVGAMKRYDKDIEDF 116
           +++SH   +  RS  E S + ++  SR+E       +    P  + + +  R   D    
Sbjct: 794 QQQSHHYGRRERSGSESSSISERCSSRVESLTPERKM---EPPGVPLNSTPRSTPD---- 846

Query: 117 HGGSFIRDNSPLPNRRFDSSEEVCVQSRLVIPVMDRLGGHES--IGQEVTERPRKKLSF 173
                 R+ SP  ++  ++  EV V+    +   +RL  H S  I +E  +R   + SF
Sbjct: 847 -----KREKSPTSDKAQEADGEVVVKKE--VDEEERLENHTSVKIKREAEDRDEDERSF 898


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 162 EVTERPRKKLSFREPCEVVGNANATLGRSSKL 193
           EV  RP   +  RE C+ V     T+  +S L
Sbjct: 128 EVNSRPETWVLGREMCKAVPFVELTVAHASVL 159


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 162 EVTERPRKKLSFREPCEVVGNANATLGRSSKL 193
           EV  RP   +  RE C+ V     T+  +S L
Sbjct: 128 EVNSRPETWVLGREMCKAVPFVELTVAHASVL 159


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.128    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,595
Number of Sequences: 317
Number of extensions: 1699
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 233
length of database: 114,650
effective HSP length: 55
effective length of query: 178
effective length of database: 97,215
effective search space: 17304270
effective search space used: 17304270
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 42 (21.0 bits)