GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000651-TA|BGIBMGA000651-PA|IPR006020|Phosphotyrosine
interaction region
         (140 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792...    30   0.60 
08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204     29   1.4  
11_06_0018 - 19298562-19299827                                         27   4.2  
01_06_1767 + 39766350-39766508,39766602-39766654,39766763-397668...    27   5.6  

>06_03_0038 -
           15778446-15778577,15778685-15779020,15779106-15779225,
           15779280-15779765,15779861-15779994,15780111-15780230,
           15784881-15785018,15785404-15786079,15786179-15786340,
           15786424-15786618,15786839-15787084,15787758-15787952
          Length = 979

 Score = 30.3 bits (65), Expect = 0.60
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 78  IYRIFYVSHDSSDL-KIFSYIARDGATNVFKCNVFKSKRKHFEKQVSRY 125
           IY +   SHDS+++ K   Y AR  A+ V  C    S  KH  K+ +RY
Sbjct: 610 IYILEGASHDSTEVNKEADYAARQHASPVKYCVKSASPMKHCVKRAARY 658


>08_02_1105 + 24344656-24345513,24346774-24347149,24348089-24348204
          Length = 449

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 75  HHPIYRIFYVSHDSSDLKIFSYIARDGATNVFKCN 109
           H P +   +    +S+++ FSYI      NV++CN
Sbjct: 360 HWPYHEPMFTCGHASNIRAFSYIETTEPLNVYQCN 394


>11_06_0018 - 19298562-19299827
          Length = 421

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)

Query: 79  YRIFYVSHDSSDLKIFSYIARDGATNVFKCNVFKSKRKHFEKQVSRYGINN 129
           Y IFYVS       +F   + DG   + KC + + K K  +    R  I N
Sbjct: 310 YGIFYVSERGKRFSVFLTESYDGTELIEKCPLVRWKEKVLQLTSYRGRIKN 360


>01_06_1767 +
           39766350-39766508,39766602-39766654,39766763-39766829,
           39766929-39766984,39767287-39767791,39767981-39768069,
           39768678-39768768,39769052-39769177,39769256-39769513,
           39769748-39770029
          Length = 561

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 5/43 (11%)

Query: 84  VSHDS----SDLKIFSYIARDGATNVFKCNVFKSKRKHFEKQV 122
           VSH+S     DL++ S+ A  GA    KC   K + +HF+++V
Sbjct: 233 VSHESVPPVEDLEVVSHDAA-GADGDTKCGKGKKRGRHFDREV 274


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,219,423
Number of Sequences: 37544
Number of extensions: 99117
Number of successful extensions: 203
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 4
length of query: 140
length of database: 14,793,348
effective HSP length: 75
effective length of query: 65
effective length of database: 11,977,548
effective search space: 778540620
effective search space used: 778540620
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)