GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000651-TA|BGIBMGA000651-PA|IPR006020|Phosphotyrosine
interaction region
         (140 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein si...    30   0.51 
At2g02350.1 68415.m00173 SKP1 interacting partner 3 (SKIP3) near...    27   4.7  
At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /...    26   8.2  

>At3g07320.1 68416.m00873 glycosyl hydrolase family 17 protein
           similar to beta-1,3-glucanase from GI:6714534 [Salix
           gilgiana]
          Length = 460

 Score = 30.3 bits (65), Expect = 0.51
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 1   MDVPRPTSRVEIVAAMRRVRYEFKARGVKKRKVIVDVSTD 40
           + +P    +  +V AMR+++   K+ GVKK KV   ++TD
Sbjct: 120 LSLPDSELKSSLVPAMRKIQRSLKSLGVKKVKVGTTLATD 159


>At2g02350.1 68415.m00173 SKP1 interacting partner 3 (SKIP3)
          nearly identical to SKP1 interacting partner 3
          GI:10716951 from [Arabidopsis thaliana]
          Length = 191

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query: 3  VPRPTSRVEIVAAMRRV-RYEFKAR 26
          +P P SR E VAA+R   R+EF  R
Sbjct: 36 IPCPESRFETVAALREAYRFEFNCR 60


>At2g33160.1 68415.m04063 glycoside hydrolase family 28 protein /
           polygalacturonase (pectinase) family protein similar to
           polygalacturonase [Salix gilgiana] GI:6714524; contains
           Pfam profile PF00295: Glycosyl hydrolases family 28
           (polygalacturonases)
          Length = 664

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 13  VAAMRRVRYEFKARGVKKRKVIVDVSTDGVRVTT 46
           V ++ R + E   +G+  R  I++ +TDG+R+ T
Sbjct: 251 VGSLGRYKEEKNVQGLTVRNSIINGTTDGLRIKT 284


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.323    0.135    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,750,082
Number of Sequences: 28952
Number of extensions: 89343
Number of successful extensions: 183
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 181
Number of HSP's gapped (non-prelim): 3
length of query: 140
length of database: 12,070,560
effective HSP length: 74
effective length of query: 66
effective length of database: 9,928,112
effective search space: 655255392
effective search space used: 655255392
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (22.0 bits)
S2: 55 (26.2 bits)