Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000650-TA|BGIBMGA000650-PA|undefined
         (70 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59016| Best HMM Match : HisKA_3 (HMM E-Value=2.1)                   36   0.005
SB_20744| Best HMM Match : CH (HMM E-Value=0.92)                       30   0.30 
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   26   4.8  
SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)                   26   4.8  
SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)                   26   4.8  
SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)                    26   4.8  
SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   4.8  
SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.4  

>SB_59016| Best HMM Match : HisKA_3 (HMM E-Value=2.1)
          Length = 286

 Score = 35.9 bits (79), Expect = 0.005
 Identities = 14/31 (45%), Positives = 25/31 (80%), Gaps = 1/31 (3%)

Query: 39 EYNLVPNDEFDTRIPLHSDEAFDYGIAFQAK 69
          EY+LV  + +D++IP+H++ AF++GI F+ K
Sbjct: 9  EYDLV-EEVYDSKIPVHNETAFEHGIRFKVK 38


>SB_20744| Best HMM Match : CH (HMM E-Value=0.92)
          Length = 1103

 Score = 29.9 bits (64), Expect = 0.30
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query: 46  DEFDTRIPLHSDEAFDYGIAFQ 67
           DE+D+ +  HSD A DYG A++
Sbjct: 681 DEYDSDVSQHSDTAIDYGRAYR 702


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 1/53 (1%)

Query: 3   RRDGKTRYVRVILKARTWKRVPMRLLKWRKKMTSTK-EYNLVPNDEFDTRIPL 54
           + + K R+    +K + W     R  + +++  +TK  Y LV   +F T +PL
Sbjct: 173 KSERKARFAHCWVKKKPWTEFIFRKRQRKRQKETTKYRYCLVLERQFTTLLPL 225


>SB_36925| Best HMM Match : EGF (HMM E-Value=1.5e-16)
          Length = 908

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 7   KTRYVRVILKARTWKRVPMRLLKWRKK----MTSTKEYNLVPNDEFDTRIPL 54
           +T   R+  + R W RV   +L++RK     M   K ++L+P  EF  + PL
Sbjct: 51  RTPKSRISGERRKWYRVTPEILEYRKLFLIFMAFRKNWDLIP--EFPIKCPL 100


>SB_16470| Best HMM Match : EGF (HMM E-Value=1.7e-06)
          Length = 484

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 6/52 (11%)

Query: 7   KTRYVRVILKARTWKRVPMRLLKWRKK----MTSTKEYNLVPNDEFDTRIPL 54
           +T   R+  + R W RV   +L++RK     M   K ++L+P  EF  + PL
Sbjct: 354 RTPKSRISGERRKWYRVTPEILEYRKLFLIFMAFRKNWDLIP--EFPIKCPL 403


>SB_10754| Best HMM Match : C2 (HMM E-Value=5.1e-40)
          Length = 2057

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)

Query: 1    MFRRDGKTRYVRVILKART-WKRVPMRLLK 29
            M +  G+TRYV+V  KART WK+    +LK
Sbjct: 1689 MLQSLGQTRYVKV-KKARTNWKKSAAAILK 1717


>SB_4260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 415

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 12 RVILKARTWKRVPMRLLKWRK-KMTS 36
          R  LKA  WKRV  + +KW++ K TS
Sbjct: 25 RFHLKAVKWKRVKGKRVKWKRVKWTS 50


>SB_16163| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 853

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 29 KWRKKMTSTKEYNLVPNDEFDTRI 52
          K++++M ST+E + V N E D  I
Sbjct: 35 KYKERMASTREEDTVGNQELDDEI 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.325    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,478,844
Number of Sequences: 59808
Number of extensions: 86889
Number of successful extensions: 226
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 222
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 16,821,457
effective HSP length: 49
effective length of query: 21
effective length of database: 13,890,865
effective search space: 291708165
effective search space used: 291708165
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 52 (25.0 bits)