Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000650-TA|BGIBMGA000650-PA|undefined
         (70 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) near...    28   0.87 
At1g16310.1 68414.m01952 cation efflux family protein contains c...    25   4.7  
At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putat...    25   8.1  
At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containi...    25   8.1  

>At3g14050.1 68416.m01773 RelA/SpoT protein, putative (RSH2) nearly
           identical to RelA/SpoT homolog RSH2 [Arabidopsis
           thaliana] GI:7141306; contains Pfam profiles PF01966: HD
           domain, PF04607: Region found in RelA / SpoT proteins
          Length = 709

 Score = 27.9 bits (59), Expect = 0.87
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 22  RVPMRLLKWRKKMTSTKEYNLVPNDEFDTRIPLHSDEAFDYGIAFQAKG 70
           ++P+  LKW+ KM    E      DE  T         +D G+AF   G
Sbjct: 654 QIPVSDLKWKLKMGDVVELTPTIPDESLTEYREEIQRMYDRGLAFSRPG 702


>At1g16310.1 68414.m01952 cation efflux family protein contains
           cation efflux family protein domain, Pfam:PF01545
          Length = 428

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/55 (23%), Positives = 23/55 (41%)

Query: 3   RRDGKTRYVRVILKARTWKRVPMRLLKWRKKMTSTKEYNLVPNDEFDTRIPLHSD 57
           R DG+TR+ R     R  +RV     K  + +    E   +  + F + +P   +
Sbjct: 77  RHDGRTRFSRYFRTPRKERRVSEYYKKQERLLEGFNEMETIHENGFASGVPTEEE 131


>At5g40870.1 68418.m04963 uracil phosphoribosyltransferase, putative
           / UMP pyrophosphorylase, putative / UPRTase, putative
           similar to SP|O65583 Uracil phosphoribosyltransferase
           (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase)
           {Arabidopsis thaliana}; contains Pfam profile PF00485:
           Phosphoribulokinase / Uridine kinase family
          Length = 486

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)

Query: 32  KKMTSTKEYNLVPNDEFDTRIPLHSDEAFDYGIAFQ 67
           +++   +EYN    D FDT   LH  E    G  +Q
Sbjct: 106 EELQRVQEYNFDHPDAFDTEQLLHCAETLKSGQPYQ 141


>At1g06710.1 68414.m00713 pentatricopeptide (PPR) repeat-containing
           protein low similarity to fertility restorer [Petunia x
           hybrida] GI:22128587; contains Pfam profile PF01535: PPR
           repeat
          Length = 946

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 29  KWRKKMTSTKEYNLVPNDEFDTRI 52
           KWR+ +T  +  N VP+  F T++
Sbjct: 244 KWREALTLVETENFVPDTVFYTKL 267


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.325    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,730,457
Number of Sequences: 28952
Number of extensions: 57992
Number of successful extensions: 149
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 145
Number of HSP's gapped (non-prelim): 4
length of query: 70
length of database: 12,070,560
effective HSP length: 50
effective length of query: 20
effective length of database: 10,622,960
effective search space: 212459200
effective search space used: 212459200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)