GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000650-TA|BGIBMGA000650-PA|undefined
         (70 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367...    30   0.26 
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457           26   3.2  
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575...    25   5.7  
08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...    25   5.7  
04_03_0389 - 15302079-15302120,15302545-15302634,15302718-153029...    25   7.5  
03_05_0537 + 25363026-25363217,25363672-25363828,25364660-253646...    25   7.5  
01_06_1622 + 38712195-38712511,38712530-38712638                       25   7.5  
10_01_0108 + 1337009-1338190                                           25   9.9  

>03_01_0480 -
           3676529-3676687,3676767-3676931,3677044-3677220,
           3678170-3678273,3678700-3678843,3679831-3679898,
           3680059-3680162,3680759-3680767,3681572-3681657,
           3681918-3683373
          Length = 823

 Score = 29.9 bits (64), Expect = 0.26
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 24  PMRLLKWRKKMTSTKEYNLVPNDEFDTRIPLHSDE 58
           PM+   W K M S    N+   D+FD ++ L SD+
Sbjct: 662 PMKTKWWEKNMKSCNMKNIESQDDFDKQLLLASDK 696


>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
          Length = 438

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/45 (26%), Positives = 25/45 (55%)

Query: 12  RVILKARTWKRVPMRLLKWRKKMTSTKEYNLVPNDEFDTRIPLHS 56
           RV  + + W +  ++++KW    +  + +NLV +   + RIPL +
Sbjct: 337 RVWTEIQRWTQTNLQMIKWSDCDSVEQWWNLVVDSLNNPRIPLRT 381


>12_01_0673 -
           5745956-5750346,5750788-5750872,5751018-5751082,
           5751816-5751993
          Length = 1572

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 26  RLLKWRKKMTSTKEYNLVPN 45
           R+L+W  K TS KE  +VP+
Sbjct: 313 RILEWLTKDTSVKESEIVPS 332


>08_02_1123 +
          24474434-24474538,24474800-24474860,24475050-24475477,
          24475915-24476231,24476991-24477216,24477302-24477547,
          24477635-24477745,24478051-24478182,24478297-24478325,
          24478352-24478502
          Length = 601

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 11/39 (28%), Positives = 20/39 (51%)

Query: 14 ILKARTWKRVPMRLLKWRKKMTSTKEYNLVPNDEFDTRI 52
          +  A  + + P R L WR++  + K +N VP    + R+
Sbjct: 60 VFTACGYHQPPRRHLPWRRRGPTPKPHNFVPPKILNLRV 98


>04_03_0389 -
          15302079-15302120,15302545-15302634,15302718-15302983,
          15303196-15303883
          Length = 361

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 16 KARTWKRVPMRLLKWRKKMTSTKEYNLVPNDEFDTRIPLHSDEAFDYGIAFQA 68
          KA+ WK+     LK ++ +    +   V  D+ D ++P  SD+  +  + F+A
Sbjct: 30 KAKFWKKAKGSQLKGKEIVVRNSDGEEVSTDDEDLQLP-DSDDDGEVRLKFKA 81


>03_05_0537 +
           25363026-25363217,25363672-25363828,25364660-25364694,
           25364803-25364848,25365277-25365311
          Length = 154

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 1/39 (2%)

Query: 26  RLLKWRKKMTSTK-EYNLVPNDEFDTRIPLHSDEAFDYG 63
           RLLK  +K    K ++N   +++ ++  P+ SD+AFD G
Sbjct: 91  RLLKSEEKHPYIKVDWNKWCDEDEESDAPVDSDDAFDEG 129


>01_06_1622 + 38712195-38712511,38712530-38712638
          Length = 141

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 4   RDGKTRYVRVILKARTWKRVPMRLLK-WRKKMTSTKEYNLVP 44
           ++G  R +   ++ R W  VP+++LK W K ++       VP
Sbjct: 92  KNGSPREIPREIRIRFWHVVPVQILKVWDKSLSFDANGEYVP 133


>10_01_0108 + 1337009-1338190
          Length = 393

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 29  KWRKKMTSTKEYNLVPNDEFDTRI 52
           KW K+    K YNLV N  F  R+
Sbjct: 285 KWSKEAVGEKFYNLVVNKMFWHRV 308


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.325    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,918
Number of Sequences: 37544
Number of extensions: 68517
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 8
length of query: 70
length of database: 14,793,348
effective HSP length: 50
effective length of query: 20
effective length of database: 12,916,148
effective search space: 258322960
effective search space used: 258322960
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)