GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000650-TA|BGIBMGA000650-PA|undefined
         (70 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical pr...    39   4e-04
Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical pr...    39   4e-04
U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical pr...    25   6.5  
AF016673-4|AAB66123.1|  684|Caenorhabditis elegans Hypothetical ...    25   6.5  
U29382-5|AAG00003.2|  353|Caenorhabditis elegans Hypothetical pr...    25   8.6  

>Z78540-6|CAD30431.1|  887|Caenorhabditis elegans Hypothetical
          protein C33G3.1b protein.
          Length = 887

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 40 YNLVPNDEFDTRIPLHSDEAFDYGIAFQAK 69
          Y+++ +D +D RIPLH++ A+ +GI F+AK
Sbjct: 10 YDIIADDVYDCRIPLHNELAYQHGIHFEAK 39


>Z72501-3|CAD30430.1|  887|Caenorhabditis elegans Hypothetical
          protein C33G3.1b protein.
          Length = 887

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 40 YNLVPNDEFDTRIPLHSDEAFDYGIAFQAK 69
          Y+++ +D +D RIPLH++ A+ +GI F+AK
Sbjct: 10 YDIIADDVYDCRIPLHNELAYQHGIHFEAK 39


>U40797-9|AAK95870.1|  349|Caenorhabditis elegans Hypothetical
           protein C28C12.12 protein.
          Length = 349

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 31  RKKMTSTKEYNLVPNDEFD 49
           RKKM     Y L+PN+E D
Sbjct: 138 RKKMVQELRYELMPNEERD 156


>AF016673-4|AAB66123.1|  684|Caenorhabditis elegans Hypothetical
           protein T06D4.4 protein.
          Length = 684

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 15  LKARTWKRVPMRLLKWRKKMTSTKEYN 41
           LK+ + KR    +  WRKK+T T+  N
Sbjct: 550 LKSESLKRFDNNVKCWRKKITGTRFLN 576


>U29382-5|AAG00003.2|  353|Caenorhabditis elegans Hypothetical
          protein R03H10.7 protein.
          Length = 353

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)

Query: 38 KEYNLVPNDEFD 49
          K YN+ PNDEF+
Sbjct: 80 KNYNIYPNDEFE 91


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.325    0.138    0.430 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,804,114
Number of Sequences: 27539
Number of extensions: 61535
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 144
Number of HSP's gapped (non-prelim): 5
length of query: 70
length of database: 12,573,161
effective HSP length: 50
effective length of query: 20
effective length of database: 11,196,211
effective search space: 223924220
effective search space used: 223924220
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)