Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
         (136 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    20   9.1  
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    20   9.1  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    20   9.1  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    20   9.1  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 99  WMIAWILENVHKSITA 114
           W+I W+ ++  KS+ A
Sbjct: 58  WVIYWLQDDALKSVYA 73


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory
          receptor candidate 47 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 16 EIAEWEKGRADQMKVFETTIKDAKD 40
          +I++W +G A   ++ + +  D+KD
Sbjct: 18 QISKWLRGSARAQEIQKRSELDSKD 42


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory
          receptor candidate 26 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 16 EIAEWEKGRADQMKVFETTIKDAKD 40
          +I++W +G A   ++ + +  D+KD
Sbjct: 18 QISKWLRGSARAQEIQKRSELDSKD 42


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory
          receptor candidate 6 protein.
          Length = 387

 Score = 19.8 bits (39), Expect = 9.1
 Identities = 7/25 (28%), Positives = 16/25 (64%)

Query: 16 EIAEWEKGRADQMKVFETTIKDAKD 40
          +I++W +G A   ++ + +  D+KD
Sbjct: 18 QISKWLRGSARAQEIQKRSELDSKD 42


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.128    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,311
Number of Sequences: 317
Number of extensions: 849
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 136
length of database: 114,650
effective HSP length: 51
effective length of query: 85
effective length of database: 98,483
effective search space:  8371055
effective search space used:  8371055
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
S2: 39 (19.8 bits)