Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
         (136 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   2.4  
SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyce...    25   3.1  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    25   4.1  
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom...    25   4.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   5.5  
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy...    24   7.2  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    24   9.5  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    24   9.5  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    24   9.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    24   9.5  

>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 58  NVAMQLEAVYRERAM---RLYQMVKGRLDYHVKKRRTENKLHQKWMIAWILENVHKSITA 114
           N  ++LEA+ R+  +    L  + +  L    + +   N LH +     ILEN ++S+  
Sbjct: 498 NQCLELEALNRKNDLIRGELDSLKEKNLVAQKQLKSANNTLHVRAKHIQILENTNQSLKK 557

Query: 115 DFQKQALNQAIKDLAL 130
           + +       +K++AL
Sbjct: 558 NLENGRAEFRLKEIAL 573


>SPCC188.04c |spc25||kinetochore protein Spc25|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 238

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 14  DAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAMR 73
           D  + E  K   +    +   + +  +AQ +AE      EA+K+N    LE  + E+A+ 
Sbjct: 28  DRFLQEERKKLLNNKNEYLRQLSEINEAQKKAEKSLEQTEARKQNFTELLEKEHEEQAIT 87

Query: 74  LYQM--VKGRLDYHVKKRR 90
             ++   + +LD  +K+++
Sbjct: 88  EQEIFSFQEKLDAMLKRKQ 106


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 69  ERAMRLYQMVKGRLDYHVKKRRTENKLHQ---KWMIAW---ILENVHKSIT-ADFQKQAL 121
           +R  RL Q  +  L+Y       EN+ HQ   K    W   IL   +  IT  DF+++  
Sbjct: 273 DRKSRLLQCFESHLNYKAWHLEFENEAHQYEIKGYRLWLQNILNRENCQITKLDFEREFS 332

Query: 122 NQAIKDL 128
              +KDL
Sbjct: 333 QLKLKDL 339


>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1125

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 75  YQMVKGRLDYHV-KKRRTENKLHQKWM-IAWILENVHKSITADFQKQALNQAIKDLALAA 132
           Y +    L  HV +K R E K    ++ I  ++E + +S    F+KQ ++ A ++  LAA
Sbjct: 564 YTLKPPNLFQHVDEKLRLEKKEQLSYLEILKVIEQMLESNEQKFKKQIVSLASENAKLAA 623

Query: 133 SR 134
            R
Sbjct: 624 QR 625


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 11   KEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRER 70
            KE    I ++++  +DQ  V  +  K A D        K  +EAKK   ++Q EA  +++
Sbjct: 3123 KETSQGIDKFKEALSDQQNVLFSKTKTANDRLQCIIQTKQAVEAKKV-YSLQAEASLQKK 3181

Query: 71   AMRL 74
            +  L
Sbjct: 3182 SFLL 3185


>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 223

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)

Query: 16  EIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAMRLY 75
           E A+ EK   +  KV ET   D K+ Q +    K   EAK + VA +L+   R+ ++  Y
Sbjct: 33  EAAKEEKPAEE--KVAETENVDVKELQSKLSELKSKYEAKDKEVA-ELKGSIRQ-SLADY 88

Query: 76  QMVKGRLDYHVKKRR 90
           + ++ R+   +++ R
Sbjct: 89  RNLENRMKRDMEQTR 103


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 24  RADQMKVFETTIKDAKDAQWRAE 46
           R DQ K F T++++ K+A  RAE
Sbjct: 670 RFDQAKQFNTSLENFKNALERAE 692


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 77  MVKGRLDYHVKKRRTENKLHQKWMI 101
           M+ G L YH+ +R+    + + WM+
Sbjct: 109 MLGGDLRYHISQRKFNESVIRIWMV 133


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 14  DAEIAEWEKGRADQMKVFETTIKDAKDAQWR 44
           D +   WEK R + M +FE      K   WR
Sbjct: 320 DLDCYVWEKTRVNYMLIFE--FNQRKSLNWR 348


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 23.8 bits (49), Expect = 9.5
 Identities = 16/80 (20%), Positives = 38/80 (47%), Gaps = 3/80 (3%)

Query: 21  EKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAMRL---YQM 77
           E+ + D   +  +++  +KD     +  K L EA+K    + L+ V R  + R    + +
Sbjct: 144 EQAKYDAEVLRYSSLGHSKDLSQMRDEAKSLYEARKSYFTVALQYVVRVTSFRSSIDFIV 203

Query: 78  VKGRLDYHVKKRRTENKLHQ 97
           ++    + ++  R  ++LH+
Sbjct: 204 IESICKFSIETFRLTDRLHE 223


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.128    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 548,563
Number of Sequences: 5004
Number of extensions: 19215
Number of successful extensions: 73
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 70
Number of HSP's gapped (non-prelim): 10
length of query: 136
length of database: 2,362,478
effective HSP length: 66
effective length of query: 70
effective length of database: 2,032,214
effective search space: 142254980
effective search space used: 142254980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 49 (23.8 bits)