Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
         (136 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr...    29   1.1  
At5g25780.1 68418.m03060 eukaryotic translation initiation facto...    28   1.9  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   1.9  
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil...    28   2.5  
At5g16790.1 68418.m01966 expressed protein                             27   3.3  
At4g11420.1 68417.m01840 eukaryotic translation initiation facto...    27   3.3  
At3g22790.1 68416.m02873 kinase interacting family protein simil...    27   3.3  
At1g74440.1 68414.m08624 expressed protein similar to YGL010w-li...    27   3.3  
At5g58320.2 68418.m07301 kinase interacting protein-related low ...    27   4.4  
At4g25860.1 68417.m03719 oxysterol-binding family protein contai...    26   7.7  
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L...    26   7.7  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    26   7.7  
At1g55050.1 68414.m06288 expressed protein ; expression supporte...    26   7.7  

>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
           protein contains Pfam profile PF01429: Methyl-CpG
           binding domain
          Length = 384

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 10  DKEVDAEIAEWEKGRADQMKV-FETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYR 68
           +KE   EIAE EK   +  K   E   K+ +  +   EGQ  + EA+KE    + EA  +
Sbjct: 144 EKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENK 203

Query: 69  E 69
           E
Sbjct: 204 E 204


>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
           subunit 9, putative / eIF-3 eta, putative / eIF3b,
           putative nearly identical to SP|Q9C5Z1 Eukaryotic
           translation initiation factor 3 subunit 9 (eIF-3 eta)
           (eIF3 p110) (eIF3b) {Arabidopsis thaliana}
          Length = 714

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 43  WRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRL-DYHVKKRRTENKLHQKWMI 101
           WR      L   K+E +A  L   Y +R     Q V   L +   +KRR  N+  QKW++
Sbjct: 605 WRPRPASFLTAEKEEEIAKNLRN-YSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVM 663

Query: 102 AW 103
            W
Sbjct: 664 QW 665


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 2   APGIGASLDKEVDAEIAEWEKGRADQMKVFETTIKD---AKDAQWRAEGQKILIEAKKEN 58
           APG GA  D   D+E  +    + +  K F+  +K+   A  ++W  E  KI+ + + + 
Sbjct: 341 APGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKA 400

Query: 59  VAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENK 94
           +       +  R     Q VK R +   +++R  +K
Sbjct: 401 IPS-----HSVRRSLFEQYVKTRAEEERREKRAAHK 431


>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
           protein / RNA recognition motif (RRM)-containing protein
           contains Pfam profiles PF00076: RNA recognition motif.
           (a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
           transport factor 2 (NTF2) domain
          Length = 1294

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 19  EWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKK 56
           +W+K + +Q K+ E   +   D  W  E  K+L E  K
Sbjct: 868 QWQKSKEEQSKLQEEEGEIQVDHSWEEEHSKVLEEESK 905


>At5g16790.1 68418.m01966 expressed protein
          Length = 233

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 44  RAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENKLHQKWMIAW 103
           R+E QK++ E KKE   ++ E     R + L +     L + V + +   +  QK M+  
Sbjct: 158 RSETQKVIHELKKEIAELEAENTASWRLLELRKKQFALLLHVVDELQETMEDEQKSMV-- 215

Query: 104 ILENVHKSITAD 115
             E + ++ITAD
Sbjct: 216 --EEMQRNITAD 225


>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
           subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
           eukaryotic translation initiation factor 3 subunit 10
           (eIF-3 theta) (Eukaryotic translation initiation factor
           3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
           SWISS-PROT:Q9LD55
          Length = 987

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 39  KDAQWRAEGQKILIEAKKENVAMQLEAVYRERAM--RLYQMVKGRLDYHVKKRRTENKLH 96
           K  Q  A+    L  AK+E  A  +EA Y+ R +  R +   + + +  + K R E+ L 
Sbjct: 679 KKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLK 738

Query: 97  QKWMIAWILEN 107
           +K  ++ +L N
Sbjct: 739 EKNRLSRMLGN 749


>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)

Query: 9   LDKEVDAEIAEW--EKGRAD-QMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEA 65
           LD+ V+A++  +  +K   D + K F   I+  K A+  +  +K++ E + EN+  Q+EA
Sbjct: 817 LDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIAELESENLEQQMEA 876

Query: 66  VY 67
            +
Sbjct: 877 EF 878


>At1g74440.1 68414.m08624 expressed protein similar to YGL010w-like
           protein GB:AAC32136 [Picea mariana]
          Length = 208

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 3   PGIGASLDKEVDAEIAEW-EKGRADQMK 29
           PG  A +D ++++ I EW EK +  QMK
Sbjct: 178 PGFKARVDSKIESGIKEWREKKKQQQMK 205


>At5g58320.2 68418.m07301 kinase interacting protein-related low
           similarity to kinase interacting protein 1 [Petunia
           integrifolia] GI:13936326
          Length = 558

 Score = 27.1 bits (57), Expect = 4.4
 Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)

Query: 15  AEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIE--AKKENVAMQLEAVYRERAM 72
           A++ E +  R DQ K  E  ++  +D + +   +KI  E   K E   + LE V + R +
Sbjct: 411 AKLLEEKIHRDDQFKELEANVRYLEDERRKVNNEKIEEEEKLKSEIEVLTLEKVEKGRCI 470

Query: 73  RLYQMVKGRLDYHVKKRRTENK 94
                    L+  + +  +E K
Sbjct: 471 ETLSRKVSELESEISRLGSEIK 492


>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
           Pfam profile PF01237: Oxysterol-binding protein
          Length = 386

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 44  RAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYH 85
           RA   KIL+E K+     Q EA       + + +VK   D+H
Sbjct: 327 RAREAKILVEEKQREALKQREASGESWVPKHFSVVKDGKDWH 368


>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
           PROTEIN KIF4, Homo sapiens, EMBL:AF179308
          Length = 1051

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 42  QWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGR 81
           QW+A  +K L++ KKE    + E +  E   R  +MV  R
Sbjct: 651 QWKASQEKELLQLKKEGRKTEHERLKLEALNRRQKMVLQR 690


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 17/76 (22%), Positives = 33/76 (43%)

Query: 4   GIGASLDKEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQL 63
           GI + L K+  A   + +       K    ++ D ++     EG ++  ++KKE    Q 
Sbjct: 71  GIQSYLSKDSSARAKKLKANTTKGSKSIVLSMDDKEEITDDFEGIRVWWQSKKEGATRQS 130

Query: 64  EAVYRERAMRLYQMVK 79
            + Y E   + Y M++
Sbjct: 131 FSFYPEANEKRYYMLR 146


>At1g55050.1 68414.m06288 expressed protein ; expression supported
           by MPSS
          Length = 914

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 85  HVKKRRTE----NKLHQKWMIAWILENVHKSITADFQKQALNQAIKDLA 129
           ++KKR T      KL+  W +  +L  + +SIT + ++Q L    K  A
Sbjct: 182 YLKKRSTRCIQGKKLYSDWRLQLLLSRLIRSITDESKEQKLVDVSKSFA 230


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.128    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,274
Number of Sequences: 28952
Number of extensions: 99270
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 13
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)