Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
(136 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 35 0.020
09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,353... 29 1.3
07_02_0030 + 12002825-12003510,12003654-12003708,12003911-120039... 29 1.3
05_07_0112 - 27755604-27756449,27756624-27756887,27757428-277575... 29 1.7
09_04_0294 - 16444565-16445137,16445999-16446256,16446609-164471... 28 2.3
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 2.3
03_05_1124 + 30559633-30559674,30559781-30559890,30559973-305600... 28 3.0
07_03_0382 + 17470508-17470807,17471449-17474517 27 4.0
02_01_0119 - 876317-876610,876937-877099,877222-877302,877508-87... 27 4.0
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 27 6.9
06_01_0510 + 3681369-3681645,3682825-3682886,3683016-3683165,368... 26 9.2
03_03_0094 + 14378953-14380728 26 9.2
02_05_0752 + 31491462-31491921,31492177-31492271,31492346-314925... 26 9.2
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 35.1 bits (77), Expect = 0.020
Identities = 33/109 (30%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 15 AEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVA---MQLEAVYRERA 71
A E E G D+M FE + D KDA +RAE + EAK + ++ +QL+ +
Sbjct: 1380 ASTGENEVGE-DEMSTFENIVNDIKDAVFRAESRTQNAEAKCKQLSHANIQLDEELKSLK 1438
Query: 72 MRLYQMVKGRLDYHVKKRRTENKLHQKWMIAWILE--NVHKSITADFQK 118
+ G L+ +K+ T+ LH K I I+E ++ KS +D ++
Sbjct: 1439 SQGSDRA-GLLEEKLKESETQ-LLHAKASIEAIVERHSIFKSSMSDMEQ 1485
>09_02_0048 - 3532663-3533475,3534086-3534589,3534715-3535740,
3536083-3536226,3536974-3537375,3537499-3537721,
3537830-3542368,3542480-3542599,3543005-3543038,
3543922-3544102,3544198-3544815,3545022-3551098,
3551139-3551304,3551508-3551614,3552056-3552178,
3553417-3553642
Length = 5100
Score = 29.1 bits (62), Expect = 1.3
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 40 DAQWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENKLHQKW 99
D R + +L ++ E+ A L+ V R+ ++ Q VKG ++++ L K+
Sbjct: 3854 DGSRRRQDISLLSYSEWESGASYLDFVRRQ--YKVSQAVKGLQKTRHDSQKSDY-LVLKY 3910
Query: 100 MIAWILENVHKSITADFQKQALNQAIKDLALAA 132
+ W KS DF K AL + DL L++
Sbjct: 3911 GLRWKRRACRKSSKGDFSKFALGSWVSDLILSS 3943
>07_02_0030 +
12002825-12003510,12003654-12003708,12003911-12003996,
12004093-12004433,12004512-12004699,12004776-12004962,
12005035-12005139,12005202-12005239,12005369-12005653
Length = 656
Score = 29.1 bits (62), Expect = 1.3
Identities = 11/44 (25%), Positives = 27/44 (61%)
Query: 5 IGASLDKEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQ 48
+ A+ E++ ++ EKG+A+ K ++ +KD +D + +++ Q
Sbjct: 515 VQAARISELEKQVQNLEKGKAELAKQRDSALKDVEDGKVKSQAQ 558
>05_07_0112 -
27755604-27756449,27756624-27756887,27757428-27757532,
27757626-27758249,27759048-27759596,27759665-27760372,
27760449-27760658,27761266-27761421,27761524-27761664,
27762015-27762101,27762209-27762309,27763071-27763293,
27763384-27763548,27763621-27763713,27763801-27764292,
27764729-27764805,27765184-27765681,27765818-27766046
Length = 1855
Score = 28.7 bits (61), Expect = 1.7
Identities = 27/127 (21%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 14 DAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAM- 72
DA E ++ ++++K+ + K + E Q +L ++E V ++E RER
Sbjct: 423 DAFRMERKRKHSEEVKIAKEVEAHEKRIRKELEKQDMLNRKREEQVRREMERNDRERRKE 482
Query: 73 --RLYQMVKGRLDYHVKKRRTENKLHQKWMIAWIL--ENVHKSITADFQKQALNQAIKDL 128
RL + + + +++R E+K +K+++ L E + + +K+A Q +
Sbjct: 483 EERLLREKQKEEERFQREQRREHKRMEKYLLKQSLRAEKIRQKEELRKEKEAARQKAANE 542
Query: 129 ALAASRV 135
A R+
Sbjct: 543 RATARRI 549
>09_04_0294 -
16444565-16445137,16445999-16446256,16446609-16447106,
16449641-16449676,16451057-16451269,16451971-16452060,
16453627-16453851
Length = 630
Score = 28.3 bits (60), Expect = 2.3
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Query: 5 IGASLDKEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLE 64
+G S+D +V E E K ++M F T K W+ K+ + KK+ QLE
Sbjct: 338 VGRSIDWDVVRE-EESSKSCLEEMAAFTITSNSPKPQAWQNLIHKMYTKCKKKVNKAQLE 396
Query: 65 AVYRERAMRLYQMV 78
++ + R + V
Sbjct: 397 YIWGQCKKRYNRWV 410
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 2.3
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 27 QMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHV 86
Q+K + ++ A ++ RAEG+ L + + E+ +++ + A + + R D+ V
Sbjct: 389 QLKELKVALEFADLSKQRAEGEATLAKERAESATREIKRLELLLAAISEERDRLRKDHAV 448
Query: 87 KKRRTENKLHQKWMIAWILENVH 109
K R + K+ IL +H
Sbjct: 449 SKSRDGDDASSKFCAFIILNGMH 471
>03_05_1124 + 30559633-30559674,30559781-30559890,30559973-30560030,
30560455-30560718,30560803-30560940,30561264-30561315,
30561525-30561604,30561929-30561988,30562084-30562164,
30562299-30562376,30563548-30563676,30563896-30564039,
30564145-30564290,30564402-30564558,30564657-30564715,
30564800-30564959,30565054-30565203,30565309-30565445,
30565531-30565677,30565995-30566052,30566417-30566518,
30566590-30566627,30566846-30566972,30567053-30567223,
30567313-30567444,30567575-30567681,30567815-30567875,
30567970-30568147,30568245-30568450,30568781-30568879,
30569021-30569236,30569333-30569472,30569559-30569660,
30569747-30569861,30570129-30570194,30570323-30570480,
30570594-30570690,30570931-30571137,30571435-30571505,
30571648-30571747,30571836-30571892,30571969-30572025,
30572108-30572188,30572319-30572401,30572504-30572651
Length = 1722
Score = 27.9 bits (59), Expect = 3.0
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 1/89 (1%)
Query: 48 QKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENK-LHQKWMIAWILE 106
+K L+E +KE+ + E + ++ + Q + RL+ ++ +EN+ L Q+ ++A +
Sbjct: 1243 EKRLLEVQKESDELSREILEKDSKLNQLQEMIERLETNLSSLESENQVLRQQSLLASADD 1302
Query: 107 NVHKSITADFQKQALNQAIKDLALAASRV 135
+ K I + K A+ ++ L + S V
Sbjct: 1303 DKSKQIESLESKIAILESENQLLRSKSSV 1331
>07_03_0382 + 17470508-17470807,17471449-17474517
Length = 1122
Score = 27.5 bits (58), Expect = 4.0
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 36 KDAKDAQWRA--EGQKILIEAKKENVAMQLEAVYRERAMRL 74
+++ +A W G +ILI + ENVA +L A Y + L
Sbjct: 283 ENSLEAHWHVCGHGSRILITTRDENVATKLNASYIHQVKEL 323
>02_01_0119 -
876317-876610,876937-877099,877222-877302,877508-877570,
878246-878355
Length = 236
Score = 27.5 bits (58), Expect = 4.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 19 EWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAV 66
E EK + K+ ET IKD K + +K+ ++A+KE + Q++A+
Sbjct: 120 EAEKLKESNEKLRET-IKDLKVEKNELRDEKVTLKAEKERLEQQVKAL 166
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 12 EVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEG---QKILIEAKKENVAMQLEAVYR 68
E D E + A + E T+ +A A AE QK+L+E ++ Q E + R
Sbjct: 170 EADKVAPELKNAVACTSYMLEQTLVEAWSADKAAEALRCQKLLVEEEEAAQKRQAELIER 229
Query: 69 ERAMRLYQ 76
+R +L Q
Sbjct: 230 KRMKKLRQ 237
>06_01_0510 +
3681369-3681645,3682825-3682886,3683016-3683165,
3683776-3683952,3684496-3684711,3684802-3686480,
3686602-3686667,3686753-3686822,3686909-3687547
Length = 1111
Score = 26.2 bits (55), Expect = 9.2
Identities = 10/40 (25%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 91 TENKLHQKWMIAW--ILENVHKSITADFQKQALNQAIKDL 128
T+N+L +W++ W I + ++ IT + +K + D+
Sbjct: 664 TDNRLRMRWLMVWNKIAKRLNGQITPNLKKIICGAGVHDV 703
>03_03_0094 + 14378953-14380728
Length = 591
Score = 26.2 bits (55), Expect = 9.2
Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 7 ASLDKEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKEN 58
A D EV AE+++ EKG +++ K + + K+ + AE + E KK+N
Sbjct: 534 AYADGEVKAELSDGEKGGSEKKKKKKKS-KEGEAGDDEAEKSEKKKEKKKKN 584
>02_05_0752 +
31491462-31491921,31492177-31492271,31492346-31492573,
31493070-31493157,31493275-31493326,31493985-31494050,
31494382-31494536,31494633-31494703,31494820-31495017,
31495103-31495144,31496223-31496324,31496514-31496603,
31496708-31496783,31497299-31497395,31497488-31497557,
31497676-31497852,31498156-31498239,31498971-31499093,
31500143-31500226,31500318-31500502,31500592-31500730,
31500841-31500900,31500969-31501040,31501136-31501197,
31501839-31501945,31501984-31502058,31502800-31503248
Length = 1168
Score = 26.2 bits (55), Expect = 9.2
Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 21 EKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKG 80
E+ D+ + E+ I+D D W + G+ E+ E+ +E + ++ RL ++V
Sbjct: 196 EEDEHDESEDEESDIEDEGDEDWTSNGEAKTDESDDEDALKSVEEL-KKSVDRLRKLVPC 254
Query: 81 RLDYHVKK 88
L+ K+
Sbjct: 255 TLEEFAKR 262
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.128 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,461,340
Number of Sequences: 37544
Number of extensions: 116526
Number of successful extensions: 361
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 13
length of query: 136
length of database: 14,793,348
effective HSP length: 75
effective length of query: 61
effective length of database: 11,977,548
effective search space: 730630428
effective search space used: 730630428
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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