GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
         (136 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    27   0.17 
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   1.2  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          25   1.2  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    24   2.1  
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     22   8.3  

>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 27.5 bits (58), Expect = 0.17
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 11  KEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAE--GQKILIEAKKENVAMQ 62
           +EVD +++E  K +    K  E+ I+  K+AQ + E  G+++   A KEN+  Q
Sbjct: 881 EEVDRKLSEALKQQKTLQKELESWIQKEKEAQEKLEEDGKRMEKWATKENMLRQ 934



 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/40 (30%), Positives = 23/40 (57%)

Query: 88  KRRTENKLHQKWMIAWILENVHKSITADFQKQALNQAIKD 127
           K   EN+LHQ+ M    +++ H+  + + + + LNQ  K+
Sbjct: 774 KEGLENELHQELMSQLSVQDQHEVDSLNDEIRRLNQENKE 813


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 82   LDYHVKKRRTENKLHQKWMIAWILENVHKSITADFQKQALNQAIKDLALAA 132
            L+ ++K  R E   H+K    W   N     T   + Q + +A+KD  + A
Sbjct: 1003 LNKYMKAARQEMSKHRKGSAEWNKINNEAHKTTREESQRIYKAVKDAVVFA 1053


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 24.6 bits (51), Expect = 1.2
 Identities = 14/70 (20%), Positives = 31/70 (44%), Gaps = 7/70 (10%)

Query: 42  QWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENKLHQKWMI 101
           +WR E   + I + +E  +   EA   +  M  ++ + G +         +NK +  W  
Sbjct: 77  RWRGENVAVKIFSSREECSWSREAEIYQTIMLRHENILGFI-------AADNKDNGTWTQ 129

Query: 102 AWILENVHKS 111
            W++ + H++
Sbjct: 130 LWLVTDYHEN 139


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 50  ILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLD 83
           ++ E +    ++  + + RER M LY    GR+D
Sbjct: 442 LMSETQFPTTSIHGDRLQREREMALYDFKSGRMD 475


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 79  KGRLDYHVKKRRTENKLHQKWMIAWI-LEN 107
           KG  +Y   ++  EN+LHQ   +  I LEN
Sbjct: 508 KGAQNYKTPRQIAENELHQYLSVENIDLEN 537


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.317    0.128    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,806
Number of Sequences: 2123
Number of extensions: 3762
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 136
length of database: 516,269
effective HSP length: 58
effective length of query: 78
effective length of database: 393,135
effective search space: 30664530
effective search space used: 30664530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 44 (21.8 bits)