Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000649-TA|BGIBMGA000649-PA|IPR008688|ATPase, F0 complex,
subunit B, mitochondrial, IPR013837|ATPase, F0 complex subunit B,
mitochondrial, metazoa
(136 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing pr... 29 1.1
At5g25780.1 68418.m03060 eukaryotic translation initiation facto... 28 1.9
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 1.9
At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) famil... 28 2.5
At5g16790.1 68418.m01966 expressed protein 27 3.3
At4g11420.1 68417.m01840 eukaryotic translation initiation facto... 27 3.3
At3g22790.1 68416.m02873 kinase interacting family protein simil... 27 3.3
At1g74440.1 68414.m08624 expressed protein similar to YGL010w-li... 27 3.3
At5g58320.2 68418.m07301 kinase interacting protein-related low ... 27 4.4
At4g25860.1 68417.m03719 oxysterol-binding family protein contai... 26 7.7
At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-L... 26 7.7
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 26 7.7
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 26 7.7
>At1g15340.1 68414.m01835 methyl-CpG-binding domain-containing
protein contains Pfam profile PF01429: Methyl-CpG
binding domain
Length = 384
Score = 29.1 bits (62), Expect = 1.1
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 10 DKEVDAEIAEWEKGRADQMKV-FETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEAVYR 68
+KE EIAE EK + K E K+ + + EGQ + EA+KE + EA +
Sbjct: 144 EKEGVTEIAEAEKENNEGEKTEAEKVNKEGEKTEAGKEGQTEIAEAEKEKEGEKAEAENK 203
Query: 69 E 69
E
Sbjct: 204 E 204
>At5g25780.1 68418.m03060 eukaryotic translation initiation factor 3
subunit 9, putative / eIF-3 eta, putative / eIF3b,
putative nearly identical to SP|Q9C5Z1 Eukaryotic
translation initiation factor 3 subunit 9 (eIF-3 eta)
(eIF3 p110) (eIF3b) {Arabidopsis thaliana}
Length = 714
Score = 28.3 bits (60), Expect = 1.9
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 43 WRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRL-DYHVKKRRTENKLHQKWMI 101
WR L K+E +A L Y +R Q V L + +KRR N+ QKW++
Sbjct: 605 WRPRPASFLTAEKEEEIAKNLRN-YSKRYEAEDQDVSLLLSEQDREKRRALNEEWQKWVM 663
Query: 102 AW 103
W
Sbjct: 664 QW 665
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 1.9
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 2 APGIGASLDKEVDAEIAEWEKGRADQMKVFETTIKD---AKDAQWRAEGQKILIEAKKEN 58
APG GA D D+E + + + K F+ +K+ A ++W E KI+ + + +
Sbjct: 341 APGAGALSDSSSDSEDEDSGPSKEECSKQFKEMLKERGIAPFSKWEKELPKIIFDPRFKA 400
Query: 59 VAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENK 94
+ + R Q VK R + +++R +K
Sbjct: 401 IPS-----HSVRRSLFEQYVKTRAEEERREKRAAHK 431
>At3g07250.1 68416.m00863 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF00076: RNA recognition motif.
(a.k.a. RRM, RBD, or RNP domain), PF02136: Nuclear
transport factor 2 (NTF2) domain
Length = 1294
Score = 27.9 bits (59), Expect = 2.5
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 19 EWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKK 56
+W+K + +Q K+ E + D W E K+L E K
Sbjct: 868 QWQKSKEEQSKLQEEEGEIQVDHSWEEEHSKVLEEESK 905
>At5g16790.1 68418.m01966 expressed protein
Length = 233
Score = 27.5 bits (58), Expect = 3.3
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 44 RAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYHVKKRRTENKLHQKWMIAW 103
R+E QK++ E KKE ++ E R + L + L + V + + + QK M+
Sbjct: 158 RSETQKVIHELKKEIAELEAENTASWRLLELRKKQFALLLHVVDELQETMEDEQKSMV-- 215
Query: 104 ILENVHKSITAD 115
E + ++ITAD
Sbjct: 216 --EEMQRNITAD 225
>At4g11420.1 68417.m01840 eukaryotic translation initiation factor 3
subunit 10 / eIF-3 theta / eIF3a (TIF3A1) identical to
eukaryotic translation initiation factor 3 subunit 10
(eIF-3 theta) (Eukaryotic translation initiation factor
3 large subunit) (eIF3a) (p114). [Arabidopsis thaliana]
SWISS-PROT:Q9LD55
Length = 987
Score = 27.5 bits (58), Expect = 3.3
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 39 KDAQWRAEGQKILIEAKKENVAMQLEAVYRERAM--RLYQMVKGRLDYHVKKRRTENKLH 96
K Q A+ L AK+E A +EA Y+ R + R + + + + + K R E+ L
Sbjct: 679 KKLQKLAKTMDYLERAKREEAAPLIEAAYQRRLVEEREFYEREQQREVELSKERHESDLK 738
Query: 97 QKWMIAWILEN 107
+K ++ +L N
Sbjct: 739 EKNRLSRMLGN 749
>At3g22790.1 68416.m02873 kinase interacting family protein similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]
Length = 1694
Score = 27.5 bits (58), Expect = 3.3
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 9 LDKEVDAEIAEW--EKGRAD-QMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQLEA 65
LD+ V+A++ + +K D + K F I+ K A+ + +K++ E + EN+ Q+EA
Sbjct: 817 LDRAVNAQVEIFILQKFIEDLEQKNFSLLIECQKYAEASSFSEKLIAELESENLEQQMEA 876
Query: 66 VY 67
+
Sbjct: 877 EF 878
>At1g74440.1 68414.m08624 expressed protein similar to YGL010w-like
protein GB:AAC32136 [Picea mariana]
Length = 208
Score = 27.5 bits (58), Expect = 3.3
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 3 PGIGASLDKEVDAEIAEW-EKGRADQMK 29
PG A +D ++++ I EW EK + QMK
Sbjct: 178 PGFKARVDSKIESGIKEWREKKKQQQMK 205
>At5g58320.2 68418.m07301 kinase interacting protein-related low
similarity to kinase interacting protein 1 [Petunia
integrifolia] GI:13936326
Length = 558
Score = 27.1 bits (57), Expect = 4.4
Identities = 20/82 (24%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 15 AEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIE--AKKENVAMQLEAVYRERAM 72
A++ E + R DQ K E ++ +D + + +KI E K E + LE V + R +
Sbjct: 411 AKLLEEKIHRDDQFKELEANVRYLEDERRKVNNEKIEEEEKLKSEIEVLTLEKVEKGRCI 470
Query: 73 RLYQMVKGRLDYHVKKRRTENK 94
L+ + + +E K
Sbjct: 471 ETLSRKVSELESEISRLGSEIK 492
>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 386
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 44 RAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGRLDYH 85
RA KIL+E K+ Q EA + + +VK D+H
Sbjct: 327 RAREAKILVEEKQREALKQREASGESWVPKHFSVVKDGKDWH 368
>At3g50240.1 68416.m05494 kinesin motor protein-related KINESIN-LIKE
PROTEIN KIF4, Homo sapiens, EMBL:AF179308
Length = 1051
Score = 26.2 bits (55), Expect = 7.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Query: 42 QWRAEGQKILIEAKKENVAMQLEAVYRERAMRLYQMVKGR 81
QW+A +K L++ KKE + E + E R +MV R
Sbjct: 651 QWKASQEKELLQLKKEGRKTEHERLKLEALNRRQKMVLQR 690
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 26.2 bits (55), Expect = 7.7
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 4 GIGASLDKEVDAEIAEWEKGRADQMKVFETTIKDAKDAQWRAEGQKILIEAKKENVAMQL 63
GI + L K+ A + + K ++ D ++ EG ++ ++KKE Q
Sbjct: 71 GIQSYLSKDSSARAKKLKANTTKGSKSIVLSMDDKEEITDDFEGIRVWWQSKKEGATRQS 130
Query: 64 EAVYRERAMRLYQMVK 79
+ Y E + Y M++
Sbjct: 131 FSFYPEANEKRYYMLR 146
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 26.2 bits (55), Expect = 7.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 85 HVKKRRTE----NKLHQKWMIAWILENVHKSITADFQKQALNQAIKDLA 129
++KKR T KL+ W + +L + +SIT + ++Q L K A
Sbjct: 182 YLKKRSTRCIQGKKLYSDWRLQLLLSRLIRSITDESKEQKLVDVSKSFA 230
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.128 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,842,274
Number of Sequences: 28952
Number of extensions: 99270
Number of successful extensions: 353
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 349
Number of HSP's gapped (non-prelim): 13
length of query: 136
length of database: 12,070,560
effective HSP length: 74
effective length of query: 62
effective length of database: 9,928,112
effective search space: 615542944
effective search space used: 615542944
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 55 (26.2 bits)
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