GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000648-TA|BGIBMGA000648-PA|IPR001223|Glycoside
hydrolase, family 18, catalytic domain, IPR011583|Chitinase II
         (393 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa...    32   0.12 
SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   1.1  
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po...    27   3.5  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    27   3.5  
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   4.6  

>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 32.3 bits (70), Expect = 0.12
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 174 VLPYVNSTI-YHDVPAIINLVDYV----NVGAYDYYTRTRNNKEADYTAPIYTPQNRN 226
           ++  + ST+ YHD+   IN+V  V     +G Y+YY  T+ NK+       Y   N N
Sbjct: 316 IITIIASTLFYHDILLPINIVGLVITLCGIGVYNYYRITKGNKKEAEKEVEYIVLNEN 373


>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 54  AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 96
           AK  G   ++ VGG ++ E  EK + ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 556

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 3/44 (6%)

Query: 114 RVKPKKIRSTWGSLWHGIKKTFGT-TPVDEKESEHREGFTALVR 156
           R  P +  ST   LW G  K  G  TPV +K+S     FT L+R
Sbjct: 75  RFIPSRDAST--ELWTGFTKVEGPLTPVKKKQSVADRNFTTLLR 116


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)

Query: 292 SYPEVCGKLINPNQQKGMRPHLRKVTDPSKRF 323
           +Y  VCGK  +P+Q+K +R   R++  P ++F
Sbjct: 417 AYAAVCGKTRSPHQKKPLRVEFRQLR-PMQQF 447


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 17/61 (27%), Positives = 25/61 (40%)

Query: 2    LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 61
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y  +  
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184

Query: 62   L 62
            L
Sbjct: 1185 L 1185


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,374
Number of Sequences: 5004
Number of extensions: 90893
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 5
length of query: 393
length of database: 2,362,478
effective HSP length: 74
effective length of query: 319
effective length of database: 1,992,182
effective search space: 635506058
effective search space used: 635506058
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 55 (26.2 bits)