Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000648-TA|BGIBMGA000648-PA|IPR001223|Glycoside
hydrolase, family 18, catalytic domain, IPR011583|Chitinase II
(393 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0234 + 15187065-15188241,15188316-15188494 71 1e-12
04_03_0649 - 18402976-18403220,18403305-18404499 54 2e-07
07_03_1783 + 29480987-29481165,29481526-29481685,29481767-294818... 34 0.23
10_08_0009 + 14075929-14076789 33 0.40
10_08_0007 + 14044844-14045767 33 0.52
01_01_1161 + 9244628-9245748,9247696-9247828,9248233-9248448,924... 32 0.92
>11_04_0234 + 15187065-15188241,15188316-15188494
Length = 451
Score = 71.3 bits (167), Expect = 1e-12
Identities = 78/329 (23%), Positives = 139/329 (42%), Gaps = 47/329 (14%)
Query: 50 TSLKAKYPGLTV--LLSVGGDADTEEPEK--YNLLLESQQARTAFINSGVLLAEQYGFDG 105
+S+K+ G V +LS+G D E+ ++ + + R AFINS + LA GFDG
Sbjct: 98 SSIKSSGGGFAVKTILSIGTDEFREDVSNAAFSRMASEKNLRRAFINSSIELARANGFDG 157
Query: 106 IDLAWQFPRVKPKKIRSTWGSLWHGIKKTFGTTPVDEKESEHREGFTALVRELKQALIHK 165
+DLAW+FP + G L + E +E E T E L+
Sbjct: 158 LDLAWRFPATQLD--MENLGDL------------LAEWRAEIMEDSTTRSTE---PLLLT 200
Query: 166 PKMQLGVTVLPYVNSTIYHDVPAIINLVDYVNVGAYDYYTRTRNNKEADYTAPIYTPQNR 225
+ + ++ + + + + + +D+VN+ + + +N+ AP+Y ++
Sbjct: 201 ATVYFSNHLFGMADTNLNYPIDDMSSSLDWVNIITFSLH---KNSNVTTADAPLY---DK 254
Query: 226 NPLQNADAAVTYWLTSGAPSQKIVLSIATFGRTWKL-DADSEIAGVPPIHTDGPGEAGPY 284
+ +A V WL +G P K+V+ I FGR+W L + D G P T G
Sbjct: 255 DSHFSASYGVISWLDAGLPPCKLVMGIPLFGRSWFLRNKDKNGLGAP---TAAAGTKQRK 311
Query: 285 VKTEGLLSYPEVCGKLINPNQQKGMRPHLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYE 344
G+++Y E+ ++ ++ VT ++ Y + G +WVS++
Sbjct: 312 SNQIGVIAYAEI---------EEYLKSQSVFVTHDNQSVADYFY-------SGDLWVSFD 355
Query: 345 DPDTAGQKAAYVKSKNLGGVAIVDLSLDD 373
+K +V L G + +S DD
Sbjct: 356 SAVVVQEKVEFVAKSQLLGYFLSTISFDD 384
>04_03_0649 - 18402976-18403220,18403305-18404499
Length = 479
Score = 54.0 bits (124), Expect = 2e-07
Identities = 46/182 (25%), Positives = 78/182 (42%), Gaps = 17/182 (9%)
Query: 193 VDYVNVGAYDYYTRTRNNKEAD-YTAPIYTPQNRNPLQNADAAVTYWLTSGAPSQKIVLS 251
+D+VNV A+ N A + AP+Y +R +A V WL +G P+ K+V+
Sbjct: 225 LDWVNVMAFGLRPPGAANANATAFDAPLY---DRASHYSASYGVVSWLDAGVPASKVVMG 281
Query: 252 IATFGRTWKLDADSEIAGVPPIHTDGPGEAGPYVKTEGLLSYPEVCGKLINPNQQKGMRP 311
I +GR+W L + P+ GP + G G +SY EV + + +G R
Sbjct: 282 IPLYGRSWFLRNKANSGVGAPVVAAGPKQRGS--NATGAMSYAEV--QWLAATATRGSRA 337
Query: 312 HLRKVTDPSKRFGTYAFRLPDDNGEGGIWVSYEDPDTAGQKAAYVKSKNLGGVAIVDLSL 371
+ + S +Y G +WV+++ +K A+ L G + ++
Sbjct: 338 VITAYDNAS--VASYV-------SVGDVWVAFDGVAVVAEKLAFAARCGLLGYFLWPVNY 388
Query: 372 DD 373
DD
Sbjct: 389 DD 390
Score = 43.2 bits (97), Expect = 4e-04
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 11 SFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTVLLSVGGD-- 68
S THL Y + P L+ + D RA+ KAK + +LS+G
Sbjct: 62 SMYTHLYYYAVAVHPARRTLLLPPDPAAASLLGDFSRAV---KAKNAAVKTVLSIGRGGG 118
Query: 69 -------ADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFP 113
A + + + +R AFI + V +A + GFDG+D+AW+FP
Sbjct: 119 AGGAAAVAGSGSDPAFAAMAADPASRAAFIGAAVKVARENGFDGLDVAWRFP 170
>07_03_1783 +
29480987-29481165,29481526-29481685,29481767-29481862,
29481948-29482062,29482175-29482337,29482536-29482707,
29483924-29484013,29484137-29484598,29484675-29485268,
29485486-29485554,29485810-29485902,29486432-29486677,
29487277-29487417,29487748-29487828,29487911-29487973,
29488059-29488166,29488303-29488383,29488474-29488521,
29488979-29489053,29489973-29490068,29490156-29490236,
29490295-29490402,29490989-29491033,29491119-29491202,
29491379-29491482,29491581-29491728
Length = 1233
Score = 33.9 bits (74), Expect = 0.23
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 3 PLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAIT 50
PL+LDP H+L Y + TY LV + +D HDNY+ I+
Sbjct: 679 PLELDPWELLQKHVLSDYVNNENATY-LVDWQRKIILDNYHDNYKNIS 725
>10_08_0009 + 14075929-14076789
Length = 286
Score = 33.1 bits (72), Expect = 0.40
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 6/68 (8%)
Query: 48 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGV----LLAEQYGF 103
A+ + KA +P L+V+L++GG DT + N + A++ + L + YG
Sbjct: 70 AVAAAKAAHPNLSVILALGG--DTVQNTGVNATFAPTSSVDAWVRNAADSVSGLIDAYGL 127
Query: 104 DGIDLAWQ 111
DG+D+ ++
Sbjct: 128 DGVDVDYE 135
>10_08_0007 + 14044844-14045767
Length = 307
Score = 32.7 bits (71), Expect = 0.52
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Query: 48 AITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGID 107
A+ S+K P + V +S+GG + P +N+ A + S + + DGID
Sbjct: 92 AVASIKQSNPNVRVAVSMGGATVNDRPVFFNITSVDSWVNNA-VESLTGIIQDNNLDGID 150
Query: 108 LAWQFPRVKPKKIRSTWGSL 127
+ ++ +V P G L
Sbjct: 151 IDYEQFQVDPDTFTECVGRL 170
>01_01_1161 +
9244628-9245748,9247696-9247828,9248233-9248448,
9249802-9249957,9250788-9250979,9251118-9251234,
9251822-9252193
Length = 768
Score = 31.9 bits (69), Expect = 0.92
Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 67 GDADTEEPEKYNLLLESQQARTAFINSGVLLAEQYGFDGIDLAWQFPRVKPKKIRSTWGS 126
G + TE Y A +I SG ++ Q G D + W+ + + + W
Sbjct: 431 GGSPTELITSYTESTGRPPALPRWITSGAVVGMQGGTDAVRRVWKQLQDHDVPVSAFWLQ 490
Query: 127 LWHGIKKTFGTTPV---DEKESEHREGFTALVRELKQ 160
W G +KT + + E + +H G+ LVR+L++
Sbjct: 491 DWVGQRKTSIGSQLWWNWEVDDDHYAGWNDLVRDLRR 527
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.137 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,804,141
Number of Sequences: 37544
Number of extensions: 576487
Number of successful extensions: 1102
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1094
Number of HSP's gapped (non-prelim): 10
length of query: 393
length of database: 14,793,348
effective HSP length: 83
effective length of query: 310
effective length of database: 11,677,196
effective search space: 3619930760
effective search space used: 3619930760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 61 (28.7 bits)
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