GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000648-TA|BGIBMGA000648-PA|IPR001223|Glycoside
hydrolase, family 18, catalytic domain, IPR011583|Chitinase II
         (393 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        25   1.1  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        25   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   5.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   5.9  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 213 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 244
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 213 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 244
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 213 ADYTAPIYTPQNRNPLQNADAAVTYWLTSGAP 244
           A +TAPIYT + +  +++ + A  ++  S AP
Sbjct: 505 AGWTAPIYTLKRKGLIKSENEAADFFSGSCAP 536


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 9/50 (18%)

Query: 250 LSIATFGRTWKLDADSEIAGVP---------PIHTDGPGEAGPYVKTEGL 290
           LSI + G  W++   SE   +P         P+H  G    GP V   G+
Sbjct: 33  LSIYSGGSDWRVAGRSESVVIPGDIVLGGLFPVHEKGGASCGPNVYNRGV 82


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 137 TTPVDEKESEHREGFTALV 155
           T P+D+  S+  EGF A++
Sbjct: 150 TNPLDDSISQANEGFCAVI 168


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 5.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 137 TTPVDEKESEHREGFTALV 155
           T P+D+  S+  EGF A++
Sbjct: 145 TNPLDDSISQANEGFCAVI 163


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.137    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,946
Number of Sequences: 429
Number of extensions: 5697
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 6
length of query: 393
length of database: 140,377
effective HSP length: 59
effective length of query: 334
effective length of database: 115,066
effective search space: 38432044
effective search space used: 38432044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)