GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000647-TA|BGIBMGA000647-PA|IPR002048|Calcium-binding
EF-hand, IPR011047|Quinonprotein alcohol dehydrogenase-like
         (596 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   2.0  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   4.5  

>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 7/16 (43%), Positives = 13/16 (81%)

Query: 46 LKEVVQALESDPDFRE 61
          + +V++ +E+DPDF E
Sbjct: 22 ISDVIEVIETDPDFHE 37


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
          growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 4.5
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 67 DEEDVKSGKIAEQLDFVNHNVRTRLDEIKRR 97
          DEE  K   + EQ D +  N R ++ ++K+R
Sbjct: 66 DEETYKLTPLNEQFDVIKDNYR-KVTDLKKR 95


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.134    0.395 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,288
Number of Sequences: 317
Number of extensions: 3614
Number of successful extensions: 17
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 2
length of query: 596
length of database: 114,650
effective HSP length: 61
effective length of query: 535
effective length of database: 95,313
effective search space: 50992455
effective search space used: 50992455
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)