Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000646-TA|BGIBMGA000646-PA|IPR006751|TAFII55 protein
conserved region
         (386 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   3.7  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   8.5  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 263 NSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKD 317
           NS N  LG+        P+     M    + +        D   +DD + SN ++
Sbjct: 248 NSINPFLGQGFAVPGLSPLGHTLSMNHKYEKIDKEEHESMDDDDDDDDDMSNSEN 302


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.8 bits (44), Expect = 8.5
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 245 NVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSST 297
           ++D+++  +   D  L   S  Q      T S+ LP   GS++  +S G+ +T
Sbjct: 11  SMDIKHEMIYREDDVLLVKSEPQLHSPCATGSNGLPAGAGSNLLCASNGLVTT 63


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.131    0.364 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,326
Number of Sequences: 317
Number of extensions: 2638
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 386
length of database: 114,650
effective HSP length: 58
effective length of query: 328
effective length of database: 96,264
effective search space: 31574592
effective search space used: 31574592
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)