Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000646-TA|BGIBMGA000646-PA|IPR006751|TAFII55 protein
conserved region
(386 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subun... 73 9e-14
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 36 0.007
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 31 0.27
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 31 0.36
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.48
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ... 30 0.63
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 29 0.84
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 29 1.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 1.5
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 1.5
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 1.5
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom... 28 2.6
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 28 2.6
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.4
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 27 3.4
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 27 4.5
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 4.5
SPBP19A11.01 |||glycine decarboxylase complex subunit H|Schizosa... 27 4.5
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|... 27 5.9
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 5.9
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 27 5.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 5.9
SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2 |Schiz... 26 7.8
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 26 7.8
>SPAC13F5.02c |ptr6|taf7|transcription factor TFIID complex subunit
Taf7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 72.5 bits (170), Expect = 9e-14
Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 12/183 (6%)
Query: 2 NKDKRELEYPAELESQFILKLPE-HPAKILRELLKSGENLKNRLTIQIDNDMRRGEVRLD 60
+ + + E +E Q IL+LP + +R+ +++ E + D RR V ++
Sbjct: 60 DSEASDREEDTYIEEQIILRLPPGEDCEYVRKAIENREVGRGADIWVKFKDQRRAVVHVN 119
Query: 61 HWLMHAKIIDLPTIVESLKTIDGKSFYKTADICQMMICKDGPDQPIAEEEIPTXXXXXXX 120
L AK++DLP I+ES K+ D K +K ADICQM+ IA E I
Sbjct: 120 GHLYAAKLVDLPCIIESNKSFDKKVIFKAADICQML---------IATERIEHENSVLNT 170
Query: 121 XXXXXXXLWPHGVTPPTKNVXXXXXXXXXXXXXVEAPEIEKEVKRLLRADNEAISFTWEV 180
++PHG+T P V +EA +E EV RLL D A S + E+
Sbjct: 171 QLKQADYIYPHGLTTPMHWVRQKRFRKRVSNRTIEA--VENEVDRLLAMDERAESTSNEL 228
Query: 181 IKE 183
I +
Sbjct: 229 IDQ 231
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 36.3 bits (80), Expect = 0.007
Identities = 32/135 (23%), Positives = 54/135 (40%), Gaps = 2/135 (1%)
Query: 184 EDESXXXXXXXXXXXXXXXXXXXXRGSKRELTLHATKPESSNIVDIFGGGVSDSDFEDET 243
E ES GS + +++ ESS+ + SDS+ E +
Sbjct: 136 ESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 195
Query: 244 VNVDLQNSRL-SVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKC 302
+ D +S S +S G+ ++ S S ++SS+ + S S+ SS+ D+
Sbjct: 196 EDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSS-SDSESESSSEDSDS 254
Query: 303 DLSSEDDGEFSNEKD 317
SS D S+ KD
Sbjct: 255 SSSSSDSESESSSKD 269
Score = 35.1 bits (77), Expect = 0.017
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 4/128 (3%)
Query: 184 EDESXXXXXXXXXXXXXXXXXXXXRGSKRELTLHATKPESSNIVDIFGGGVSDSDFEDET 243
E ES GS + +++ ESS+ + SDS+ E +
Sbjct: 190 ESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSS 249
Query: 244 VNVDLQNSRL---SVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDA 300
+ D +S S S+ S +S+N S E + S + E S + S SS+SD+
Sbjct: 250 EDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSESESSS-EDSDSTSSSSDS 308
Query: 301 KCDLSSED 308
SSED
Sbjct: 309 DSSSSSED 316
Score = 31.5 bits (68), Expect = 0.21
Identities = 20/82 (24%), Positives = 37/82 (45%)
Query: 236 DSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVS 295
D+D + + + ++S S S +S ++S E SS+ + + S
Sbjct: 125 DNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSS 184
Query: 296 STSDAKCDLSSEDDGEFSNEKD 317
S+SD++ + SSED S+ D
Sbjct: 185 SSSDSESESSSEDSDSSSSSSD 206
Score = 30.7 bits (66), Expect = 0.36
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)
Query: 210 SKRELTLHATKPESSNIVDIFGGGVSDSDFEDETVNVDLQNSRL-SVCDSRLSGNSTNQS 268
S E +++ ESS+ + SDS+ E + + D +S S +S G+ ++ S
Sbjct: 108 SSDESDSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSS 167
Query: 269 LGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSED-DGEFSNEKDD 318
S ++SS+ + S S+ SS+ D+ SS D + E S+E D
Sbjct: 168 SSSSESESSSEDNDSSSSS-SDSESESSSEDSDSSSSSSDSESESSSEGSD 217
Score = 30.3 bits (65), Expect = 0.48
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Query: 219 TKPESSNIVDIFGGGVSDSDFEDETVNVD-LQNSRLSVCDSRLSGNSTNQSLGESLTKSS 277
++ ESS+ SDS+ E + D +S S +S N ++ S +S ++SS
Sbjct: 135 SESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESS 194
Query: 278 ALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDD 318
+ + S S SS SS + E S+E +D
Sbjct: 195 SEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDND 235
Score = 30.3 bits (65), Expect = 0.48
Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 2/136 (1%)
Query: 184 EDESXXXXXXXXXXXXXXXXXXXXRGSKRELTLHATKPESSNIVDIFGGGVSDSDFEDET 243
E ES S + ++ ESS+ S S+ E +
Sbjct: 172 ESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSS 231
Query: 244 VNVDLQNSRL-SVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSS-TSDAK 301
+ D +S S +S + ++ S +S ++SS+ + S+ S SS +SD++
Sbjct: 232 EDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNSSDSEDDSSSDSSDSE 291
Query: 302 CDLSSEDDGEFSNEKD 317
+ SSED S+ D
Sbjct: 292 SESSSEDSDSTSSSSD 307
Score = 26.6 bits (56), Expect = 5.9
Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 3/137 (2%)
Query: 184 EDESXXXXXXXXXXXXXXXXXXXXRGSKRELTLHATKPESSNIVDIFGGGVSDSDFEDET 243
E ES + + ++ ESS+ SDS+ E +
Sbjct: 154 ESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSS 213
Query: 244 VNVDLQNSRLSV-CDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKC 302
D +S S +S N ++ S +S ++SS+ + S S+ SS+ D+
Sbjct: 214 EGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSS-SDSESESSSKDSDS 272
Query: 303 DLSSED-DGEFSNEKDD 318
+S D + + S++ D
Sbjct: 273 SSNSSDSEDDSSSDSSD 289
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 31.1 bits (67), Expect = 0.27
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 258 SRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDD 309
S + GN TN+ L + +S FG H+ +S + ++D L++EDD
Sbjct: 447 SSIKGNKTNEELEKEFKSTSD---NFGKHIILTSSFSNQSADKGSSLAAEDD 495
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 30.7 bits (66), Expect = 0.36
Identities = 19/49 (38%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 226 IVDIFGGGVSDSDFEDETVNVDLQNSRLSVC-DSRLSGNSTNQSLGESL 273
+V+ F GG D E V D N LS C DS TNQ E L
Sbjct: 12 LVEYFSGGTRQVDVEKLGVCTDNSNVELSSCPDSSFDDEKTNQVNSEGL 60
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.3 bits (65), Expect = 0.48
Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 238 DFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVSST 297
+ D+ VN+ QN+ L +S+L + N + +++T + H+ Q S+ VS
Sbjct: 798 ELRDDHVNMQSQNNTLLESESKLKTDCENLT-QQNMTLIDNVQKLMHKHVNQESK-VSEL 855
Query: 298 SDAKCDLSSEDDGEFS------NEKDDMALRINQLKLEVDELKQRRQKIKLEISGIENLA 351
+ LS + S ++ D + ++ +L D L+Q ++ SG+++L
Sbjct: 856 KEVNGKLSLDLKNLRSSLNVAISDNDQILTQLAELSKNYDSLEQESAQLN---SGLKSLE 912
Query: 352 LRQRFQDNLHTLNQDIMYKEMEYQGLLTLQNSE 384
++ LHT N+++ + + G L ++ S+
Sbjct: 913 AEKQL---LHTENEELHIRLDKLTGKLKIEESK 942
>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 817
Score = 29.9 bits (64), Expect = 0.63
Identities = 16/71 (22%), Positives = 34/71 (47%)
Query: 264 STNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRI 323
S+N + +S S+ + SH + + VSS+ ++ D+ S D + D+ ++
Sbjct: 95 SSNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYNDEKSVNA 154
Query: 324 NQLKLEVDELK 334
+ L+ D L+
Sbjct: 155 SALRTTEDRLR 165
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 29.5 bits (63), Expect = 0.84
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 236 DSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQSSQGVS 295
D+D + +T ++ +S S +L+ S ++ ES ++S LP E S+ +
Sbjct: 436 DADRDSDTSSISDTSSNSSAPHEQLNATSLASTVDES-SRSPPLP-EVESNKENDIKRKQ 493
Query: 296 STSDAKCDLSSEDDGEFSNEKDD 318
D D SS DD F+N K D
Sbjct: 494 PFHDLM-DSSSPDDSSFANAKSD 515
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 25 HPAKILRELLKSGENLKNRLTIQIDND 51
HPAK L ELL ENL N T++ +D
Sbjct: 278 HPAKNLVELLTEKENLINESTLESPSD 304
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.7 bits (61), Expect = 1.5
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 327 KLEVDELKQRRQKIKLEISGIENLALRQRFQD 358
KL V E+ ++ K+K++ GI NL + FQD
Sbjct: 1124 KLAVQEVIEKVMKVKIDTDGIYNLDSMEIFQD 1155
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.7 bits (61), Expect = 1.5
Identities = 29/90 (32%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 218 ATKPESSNI-VDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKS 276
A P S+++ V I +S SD L +S S S S + + S S T S
Sbjct: 147 AILPSSTSVEVSISSSSLSSSD--------PLTSSTFSSLSSSTSSSQPSVSSTSSSTFS 198
Query: 277 SALPIEFGSHMFQSSQGVSSTSDAKCDLSS 306
SA P S SS VSS+S SS
Sbjct: 199 SAAPTSTSSSYLSSSSVVSSSSSPSSSSSS 228
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 28.7 bits (61), Expect = 1.5
Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 5/104 (4%)
Query: 266 NQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNE--KDDMALRI 323
NQ+ G + A+PI + QG+ K D S E SNE +D++ + +
Sbjct: 9 NQASGSKINTELAVPIFQSRRRHRPRQGLKRKKGFKRDDDSGGSSESSNEDMRDNIPI-V 67
Query: 324 NQLKLEVDELKQRRQKIKLEISGIENLALRQRFQDNLHTLNQDI 367
+ K V + +R+ + E S ++++ + +Q NL + +
Sbjct: 68 SGRKKTVRLNRLQRESEQFENSALKDINV--EYQSNLSATGESV 109
>SPAC926.04c |hsp90|swo1|heat shock protein
Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
Length = 704
Score = 27.9 bits (59), Expect = 2.6
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 307 EDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISGIENL 350
E+ E NE+DD A +I ++ E ++ +++ +K+K + E L
Sbjct: 222 EETEEVKNEEDDKAPKIEEVDDESEKKEKKTKKVKETTTETEEL 265
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 27.9 bits (59), Expect = 2.6
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 12/126 (9%)
Query: 232 GGVSDSDFEDETVNVD--LQNSRLSVCDSRLS--------GNSTNQSLGESLTKSSALPI 281
G V S E+E V++D L N + +S + GN+ + + E+L +S A
Sbjct: 126 GSVGSSIDENELVDLDTLLDNDQPEKNESNTASTIRPPWIGNNDHATDKENLLESDASSS 185
Query: 282 EFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIK 341
S + SD++ ++ S D E D +++ L+ + L Q+R+K +
Sbjct: 186 NDSESELTDSADNMNESDSESEIESSDSDHDDGENSDS--KLDNLRNYIVSLNQKRKKDE 243
Query: 342 LEISGI 347
+ +
Sbjct: 244 ADAESV 249
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.5 bits (58), Expect = 3.4
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 230 FGGGVSDSDFE--DETVNVDLQNSRLSVCDSRLSG--NSTNQSLGESLTKSSA------- 278
F GG SDSD E D + L +SRL D S +S +S S ++SS
Sbjct: 5 FKGGSSDSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEE 64
Query: 279 ----LPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKD 317
+P + + S+ S +S+ + + SE+D E S+E +
Sbjct: 65 SEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVSDESE 107
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.5 bits (58), Expect = 3.4
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)
Query: 228 DIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTK---SSALPIEFG 284
D FG D E + V ++ + +S L + + L S+ K + P F
Sbjct: 205 DDFGSESEDDSKEAHSEEVFRSEEQIQLANSLLQKLNACKILFLSIKKRRIKNEYPNTFL 264
Query: 285 SHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKDD 318
+F +++ S + D EDD F NE D+
Sbjct: 265 GELFNAAKQTSDSIDDIVAQIQEDDENFENELDN 298
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 27.1 bits (57), Expect = 4.5
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 5/108 (4%)
Query: 238 DFEDETVNVDLQNSRLSVCDSRL--SGNSTNQSLGES---LTKSSALPIEFGSHMFQSSQ 292
D + V + +R+S D L G + L E+ TK I
Sbjct: 326 DTSQRDIKVIMATNRISDLDPALIRPGRIDRKILFENPDEATKRKIFTIHTSKMNLGEDV 385
Query: 293 GVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKI 340
+ K DLS + +E +ALR ++++ +D+ +Q R+K+
Sbjct: 386 NLEELIQCKDDLSGAEIKAIVSEAGLLALRERRMRVVMDDFRQAREKV 433
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 27.1 bits (57), Expect = 4.5
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 14 LESQFILKLPEHPAKILRELLKSGENLKNRLTIQIDNDMRRGEVRLDHWLMHAKIIDLPT 73
+E Q P+ K++ L+ ENL T+ D++ GE L++ L ++ +D
Sbjct: 450 IEEQLNSLQPKQQEKVVDSELEVDENLLEDATMIQDDESHEGESHLENSL--SEYVDSVP 507
Query: 74 IVESLKTIDGKSFYKTA 90
E +K K FY A
Sbjct: 508 AEEIVKVNLTKRFYLEA 524
>SPBP19A11.01 |||glycine decarboxylase complex subunit
H|Schizosaccharomyces pombe|chr 2|||Manual
Length = 169
Score = 27.1 bits (57), Expect = 4.5
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 264 STNQSLGESLTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSNEKD 317
S N+SLG+S K S+ P E G + +SS + K L+ E +F E+D
Sbjct: 116 SINESLGDSPDKVSSSPEEEG---WICKIKLSSPDELKSLLNDESYAQFCKEED 166
>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 5.9
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 303 DLSSEDDGEFSNEKDDMALRINQLKL----EVDELKQRRQKIKLEISGIENLALRQRFQD 358
+ +SE+ F E D + + QLKL + +L QR Q I +E I + + +++
Sbjct: 524 ETASEEKNAFDAESDKLERELQQLKLSSHNSMLQLDQRIQSINIEADQIAHACM--EYKN 581
Query: 359 NLH 361
N++
Sbjct: 582 NIY 584
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 5.9
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 8/68 (11%)
Query: 32 ELLKSGENLKNRL--TIQIDNDMRRGEVRLDHWLMHAKIIDLPTIVESLKTIDGKSFYKT 89
EL+ S E L +R+ T +D R E R+ + A D TIVE+ K+ G SF+ T
Sbjct: 437 ELVSSAELLMHRVRQTESVDYRDRATERRI----VPAASSD--TIVEAKKSSQGSSFHST 490
Query: 90 ADICQMMI 97
+++ M+
Sbjct: 491 SNVSMKML 498
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 26.6 bits (56), Expect = 5.9
Identities = 21/89 (23%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Query: 294 VSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIK-LEISGIENLAL 352
+ + ++ K ED + E + +L+ EV+ L++ K K L + E A
Sbjct: 111 IEAANNLKTQKQIEDLKKEKEEMEGSLQGKEKLEREVENLRKELDKYKDLVETEAEKRAA 170
Query: 353 RQRFQDNLHTLNQDIMYKEMEYQGLLTLQ 381
+ + L Q +YK+ME + T+Q
Sbjct: 171 ITKEECEKSWLEQQKLYKDMEQENASTIQ 199
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.6 bits (56), Expect = 5.9
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 301 KCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQKIKLEISGIENLALRQRFQDNL 360
K LS+E + + SN++ D I QL+ +DEL + E+ ++L + +D +
Sbjct: 265 KDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDELSE-------ELDVAQDLLTEK--EDEI 315
Query: 361 HTLNQDIMYKEMEYQGLLTLQNS 383
TL + I KE +NS
Sbjct: 316 ATLKRQIEEKENSSSAFENEENS 338
>SPAC23C4.10 |sec2||guanyl-nucleotide exchange factor Sec2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 26.2 bits (55), Expect = 7.8
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 9/102 (8%)
Query: 213 ELTLHATKPESSNIVDIFGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGES 272
E L +T+ + + + D+ +SDS ++ ++ L + V D N S+G
Sbjct: 151 ETLLSSTQHQLTELKDVMHS-MSDSHEQNNALHPPLSRTTSFVAD--------NVSVGSF 201
Query: 273 LTKSSALPIEFGSHMFQSSQGVSSTSDAKCDLSSEDDGEFSN 314
+ +S L I G+ +S +SD ++S E F N
Sbjct: 202 ASSTSGLDILTGTSARESLDAKEISSDKHLNISGERPATFPN 243
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 26.2 bits (55), Expect = 7.8
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 230 FGGGVSDSDFEDETVNVDLQNSRLSVCDSRLSGNSTNQSLGESLTKSSALPIEFGSHMFQ 289
FG +S D+ LQ + + D++ S + L S + ++F + +
Sbjct: 267 FGKIISCQVIRDKETGDSLQYAFIEF-DNKESVEKAYFKMQNVLIDDSRIHVDFSQSVAR 325
Query: 290 SSQGVSSTSDAKCDLSSEDDGEFSNEKDDMALRINQLKLEVDELKQRRQK 339
Q +S D K S DD E+ D R N D+ + RR++
Sbjct: 326 YRQYYNSNRDRKRSSSRSDDREYHRRSDGRYDRSNYR----DDYRHRRKE 371
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.131 0.364
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,248
Number of Sequences: 5004
Number of extensions: 60744
Number of successful extensions: 210
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 36
length of query: 386
length of database: 2,362,478
effective HSP length: 74
effective length of query: 312
effective length of database: 1,992,182
effective search space: 621560784
effective search space used: 621560784
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
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